compare_gene_ontology
caitlinpage
2024-10-09
Last updated: 2024-10-09
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Introduction
library(Damsel)
library(plyranges)Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabsThe following objects are masked from 'package:base':
anyDuplicated, aperm, append, as.data.frame, basename, cbind,
colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
tapply, union, unique, unsplit, which.max, which.minLoading required package: IRangesWarning: package 'IRanges' was built under R version 4.4.1Loading required package: S4VectorsWarning: package 'S4Vectors' was built under R version 4.4.1Loading required package: stats4
Attaching package: 'S4Vectors'The following object is masked from 'package:utils':
findMatchesThe following objects are masked from 'package:base':
expand.grid, I, unnameLoading required package: GenomicRangesLoading required package: GenomeInfoDb
Attaching package: 'plyranges'The following object is masked from 'package:IRanges':
sliceThe following object is masked from 'package:stats':
filterlibrary(dplyr)
Attaching package: 'dplyr'The following objects are masked from 'package:plyranges':
between, n, n_distinctThe following objects are masked from 'package:GenomicRanges':
intersect, setdiff, unionThe following object is masked from 'package:GenomeInfoDb':
intersectThe following objects are masked from 'package:IRanges':
collapse, desc, intersect, setdiff, slice, unionThe following objects are masked from 'package:S4Vectors':
first, intersect, rename, setdiff, setequal, unionThe following objects are masked from 'package:BiocGenerics':
combine, intersect, setdiff, unionThe following objects are masked from 'package:stats':
filter, lagThe following objects are masked from 'package:base':
intersect, setdiff, setequal, unionlibrary(ggplot2)
library(org.Dm.eg.db)Loading required package: AnnotationDbiLoading required package: BiobaseWelcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'AnnotationDbi'The following object is masked from 'package:dplyr':
selectThe following object is masked from 'package:plyranges':
selectlibrary(TxDb.Dmelanogaster.UCSC.dm6.ensGene)Loading required package: GenomicFeatureslibrary(BSgenome.Dmelanogaster.UCSC.dm6)Loading required package: BSgenomeLoading required package: BiostringsLoading required package: XVector
Attaching package: 'Biostrings'The following object is masked from 'package:base':
strsplitLoading required package: BiocIOLoading required package: rtracklayer
Attaching package: 'rtracklayer'The following object is masked from 'package:BiocIO':
FileForFormatgatc_regions <- getGatcRegions(BSgenome.Dmelanogaster.UCSC.dm6::BSgenome.Dmelanogaster.UCSC.dm6)$regions %>% data.frame()Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignored
Warning in .local(x, row.names, optional, ...): 'optional' argument was ignoredWarning in GenomeInfoDb::renameSeqlevels(x = df_, value = newStyle): invalid
seqlevels 'chrM' ignoreddamsel_peaks <- readRDS("../output/damsel_peaks.rds")
vissers_peaks_mod <- readRDS("../output/vissers_peaks_mod.rds")Obtain genes
txdb <- TxDb.Dmelanogaster.UCSC.dm6.ensGene
genes <- collateGenes(txdb, gatc_regions, org.Dm.eg.db) 1 gene was dropped because it has exons located on both strands of the
same reference sequence or on more than one reference sequence, so
cannot be represented by a single genomic range.
Use 'single.strand.genes.only=FALSE' to get all the genes in a
GRangesList object, or use suppressMessages() to suppress this message.'select()' returned 1:many mapping between keys and columnsTSS taken as start of gene, taking strand into accountgenesGRanges object with 17806 ranges and 4 metadata columns:
seqnames ranges strand | ensembl_gene_id gene_name
<Rle> <IRanges> <Rle> | <character> <character>
[1] chr2L 7529-9484 + | FBgn0031208 CR11023
[2] chr2L 9839-21376 - | FBgn0002121 l(2)gl
[3] chr2L 21823-25155 - | FBgn0031209 Ir21a
[4] chr2L 21952-24237 + | FBgn0263584 asRNA:CR43609
[5] chr2L 25402-65404 - | FBgn0051973 Cda5
... ... ... ... . ... ...
[17802] chrUn_CP007120v1 70955-74924 + | FBgn0267504 28SrRNA:CR45844
[17803] chrUn_DS483646v1 7386-9527 - | FBgn0085692 CG41561
[17804] chrUn_DS483910v1 699-1770 + | FBgn0267596 <NA>
[17805] chrUn_DS484581v1 7-354 - | FBgn0085540 lncRNA:CR40947
[17806] chrUn_DS484898v1 1-740 - | FBgn0267595 <NA>
TSS n_regions
<integer> <numeric>
[1] 7529 3
[2] 21376 33
[3] 25155 8
[4] 21952 6
[5] 65404 93
... ... ...
[17802] 70955 0
[17803] 9527 0
[17804] 699 0
[17805] 354 0
[17806] 740 0
-------
seqinfo: 1870 sequences from an unspecified genome; no seqlengthsdamsel_genes <- annotatePeaksGenes(damsel_peaks, genes, gatc_regions)
damsel_genes$closest
# A tibble: 2,873 × 13
seqnames start end width total_regions n_regions_dm peak_id rank_p
<fct> <int> <int> <dbl> <int> <dbl> <chr> <int>
1 chr2L 5154 9484 4331 8 3 PS_1 2814
2 chr2L 9839 21376 11538 33 5 PS_3 192
3 chr2L 19789 25155 5367 14 5 PS_4 64
4 chr2L 25402 65404 40003 93 3 PM_5 2727
5 chr2L 65609 68330 2722 7 7 PS_7 764
6 chr2L 71493 76602 5110 7 7 PS_8 763
7 chr2L 76348 79736 3389 10 4 PM_9 3071
8 chr2L 93094 102086 8993 31 9 PM_11 466
9 chr2L 94739 102086 7348 28 7 PS_14 1548
10 chr2L 114726 156030 41305 128 7 PS_17 849
# ℹ 2,863 more rows
# ℹ 5 more variables: gene_position <chr>, ensembl_gene_id <chr>,
# gene_name <chr>, midpoint_is <chr>, position <chr>
$top_five
# A tibble: 2,873 × 11
seqnames start end peak_id rank_p n_genes list_ensembl list_gene position
<fct> <int> <int> <chr> <int> <int> <chr> <chr> <chr>
1 chr2L 5154 9484 PS_1 2814 1 FBgn0031208 CR11023 Peak_up…
2 chr2L 9839 21376 PS_3 192 1 FBgn0002121 l(2)gl Peak_wi…
3 chr2L 9839 25155 PS_4 64 3 FBgn0031209… Ir21a, l… Peak_up…
4 chr2L 25402 65404 PM_5 2727 1 FBgn0051973 Cda5 Peak_wi…
5 chr2L 65609 71390 PS_7 764 4 FBgn0266878… lncRNA:C… Peak_en…
6 chr2L 71039 77783 PS_8 763 3 FBgn0031213… galectin… Peak_en…
7 chr2L 76348 87387 PM_9 3071 2 FBgn0031214… CG11374,… Peak_do…
8 chr2L 93094 102086 PM_11 466 1 FBgn0031216 Zir Peak_ov…
9 chr2L 94739 106732 PS_14 1548 4 FBgn0031216… Zir, Cre… Peak_wi…
10 chr2L 114726 156030 PS_17 849 11 FBgn0031228… ND-15, N… Peak_wi…
# ℹ 2,863 more rows
# ℹ 2 more variables: distance_TSS <chr>, min_distance <chr>
$all
# A tibble: 7,069 × 33
seqnames start end width gene_seqnames gene_start gene_end gene_width
<fct> <int> <int> <dbl> <fct> <int> <int> <int>
1 chr2L 5154 9484 4331 chr2L 7529 9484 1956
2 chr2L 9839 21376 11538 chr2L 9839 21376 11538
3 chr2L 19789 25155 5367 chr2L 21823 25155 3333
4 chr2L 9839 21643 11805 chr2L 9839 21376 11538
5 chr2L 19789 24237 4449 chr2L 21952 24237 2286
6 chr2L 25402 65404 40003 chr2L 25402 65404 40003
7 chr2L 65609 68330 2722 chr2L 65999 66242 244
8 chr2L 65609 68330 2722 chr2L 66318 66524 207
9 chr2L 65609 71390 5782 chr2L 66482 71390 4909
10 chr2L 71493 76602 5110 chr2L 71757 76211 4455
# ℹ 7,059 more rows
# ℹ 25 more variables: gene_strand <fct>, peak_seqnames <fct>,
# peak_start <int>, peak_end <int>, peak_width <int>, peak_strand <fct>,
# ensembl_gene_id <chr>, gene_name <chr>, TSS <int>, n_regions <dbl>,
# peak_id <chr>, rank_p <int>, logFC_match <dbl>, FDR <dbl>,
# multiple_peaks <dbl>, region_pos <chr>, n_regions_dm <dbl>,
# n_regions_not_dm <dbl>, peak_midpoint <dbl>, distance_TSS <dbl>, …The same function for annotating Vissers peaks cannot be used as the files are different formats However this works similarly, and Damsel allows for the same maximum gap between a peak and gene - though this is modifiable
vissers_genes3 <- pair_overlaps(as_granges(vissers_peaks_mod), genes, maxgap = 5000)
vissers_genes3 <- vissers_genes3 %>% data.frame()damsel_ontology <- testGeneOntology(damsel_genes$all, genes, gatc_regions)Bias will be n_regions that are contained within the gene lengthWarning in pcls(G): initial point very close to some inequality constraintsFetching GO annotations...For 4456 genes, we could not find any categories. These genes will be excluded.To force their use, please run with use_genes_without_cat=TRUE (see documentation).This was the default behavior for version 1.15.1 and earlier.Calculating the p-values...'select()' returned 1:1 mapping between keys and columns
plotGeneOntology2(damsel_ontology$signif_results) 
damsel_ontology$signif_results category over_represented_pvalue under_represented_pvalue numDEInCat
1 GO:0005622 6.524873e-28 1.0000000 2085
2 GO:0043231 4.127436e-24 1.0000000 1519
3 GO:0043227 2.321600e-22 1.0000000 1561
4 GO:0009987 6.222508e-22 1.0000000 2422
5 GO:0048468 3.202356e-20 1.0000000 548
6 GO:0030154 3.244321e-20 1.0000000 634
7 GO:0043229 3.333069e-20 1.0000000 1694
8 GO:0048869 3.991422e-20 1.0000000 634
9 GO:0044237 6.853504e-19 1.0000000 1545
10 GO:0050789 7.106883e-19 1.0000000 1308
11 GO:0043226 7.844088e-19 1.0000000 1717
12 GO:0065007 1.663015e-18 1.0000000 1375
13 GO:0019222 1.993572e-18 1.0000000 748
14 GO:0060255 2.206193e-18 1.0000000 698
15 GO:0030182 4.287385e-18 1.0000000 349
16 GO:0050794 6.075872e-18 1.0000000 1219
17 GO:1901576 1.028455e-17 1.0000000 1187
18 GO:0048699 1.354725e-17 1.0000000 370
19 GO:0009058 1.607335e-17 1.0000000 1191
20 GO:0044249 1.917214e-17 1.0000000 1173
21 GO:0048519 9.720440e-17 1.0000000 575
22 GO:0009059 1.670182e-16 1.0000000 1043
23 GO:0048731 2.318716e-16 1.0000000 564
24 GO:0005634 2.701785e-16 1.0000000 938
25 GO:0031323 5.252453e-16 1.0000000 693
26 GO:0022008 5.264774e-16 1.0000000 386
27 GO:0048666 8.595383e-16 1.0000000 280
28 GO:0080090 1.102071e-15 1.0000000 596
29 GO:0051171 1.278438e-15 1.0000000 588
30 GO:0010467 1.743797e-15 1.0000000 968
31 GO:0005488 1.866496e-15 1.0000000 1716
32 GO:0006725 2.494350e-15 1.0000000 858
33 GO:0005737 2.605753e-15 1.0000000 1424
34 GO:0048523 3.112956e-15 1.0000000 536
35 GO:0007399 4.344919e-15 1.0000000 454
36 GO:0010556 2.637882e-14 1.0000000 599
37 GO:0031175 3.438222e-14 1.0000000 222
38 GO:0006139 4.008885e-14 1.0000000 812
39 GO:0048518 4.882126e-14 1.0000000 608
40 GO:1901360 5.039366e-14 1.0000000 874
41 GO:0071840 5.412037e-14 1.0000000 996
42 GO:0031326 7.223210e-14 1.0000000 603
43 GO:0034641 7.795370e-14 1.0000000 993
44 GO:0010468 8.104964e-14 1.0000000 592
45 GO:0016070 9.159984e-14 1.0000000 658
46 GO:0046483 9.766999e-14 1.0000000 838
47 GO:0032502 1.086372e-13 1.0000000 948
48 GO:0009889 1.140558e-13 1.0000000 605
49 GO:0090304 1.460329e-13 1.0000000 727
50 GO:0016043 1.771737e-13 1.0000000 947
51 GO:0005515 2.364063e-13 1.0000000 799
52 GO:0003006 5.650554e-13 1.0000000 351
53 GO:0043170 1.299207e-12 1.0000000 1414
54 GO:0048522 1.715199e-12 1.0000000 550
55 GO:0006807 2.197827e-12 1.0000000 1489
56 GO:0048812 3.195981e-12 1.0000000 199
57 GO:0008152 3.353912e-12 1.0000000 1771
58 GO:0048858 4.931922e-12 1.0000000 200
59 GO:0007275 5.211862e-12 1.0000000 756
60 GO:0071704 5.701475e-12 1.0000000 1688
61 GO:0120039 5.747254e-12 1.0000000 199
62 GO:0048856 7.491674e-12 1.0000000 882
63 GO:0010605 8.295213e-12 1.0000000 317
64 GO:0048667 9.239593e-12 1.0000000 196
65 GO:0032991 1.497509e-11 1.0000000 916
66 GO:0048513 1.769374e-11 1.0000000 443
67 GO:0000902 2.415045e-11 1.0000000 237
68 GO:0009892 2.488980e-11 1.0000000 331
69 GO:0061564 2.551447e-11 1.0000000 162
70 GO:0007409 5.225506e-11 1.0000000 154
71 GO:0007276 5.885418e-11 1.0000000 335
72 GO:0022414 5.936873e-11 1.0000000 439
73 GO:0048609 9.756513e-11 1.0000000 340
74 GO:0032989 9.840790e-11 1.0000000 240
75 GO:0044238 9.891760e-11 1.0000000 1566
76 GO:0003676 1.319520e-10 1.0000000 659
77 GO:0031324 1.710319e-10 1.0000000 314
78 GO:0032501 1.789521e-10 1.0000000 1093
79 GO:0007411 2.105662e-10 1.0000000 128
80 GO:0051246 4.785111e-10 1.0000000 158
81 GO:0051252 6.057757e-10 1.0000000 432
82 GO:0010558 7.277913e-10 1.0000000 281
83 GO:0007166 8.560034e-10 1.0000000 272
84 GO:0031327 8.583223e-10 1.0000000 283
85 GO:0051172 8.638001e-10 1.0000000 197
86 GO:0019219 8.667594e-10 1.0000000 448
87 GO:0097485 9.462923e-10 1.0000000 129
88 GO:0009890 1.048605e-09 1.0000000 284
89 GO:0022412 1.049285e-09 1.0000000 314
90 GO:0034654 1.294919e-09 1.0000000 459
91 GO:0019438 1.614728e-09 1.0000000 476
92 GO:0018130 1.734857e-09 1.0000000 478
93 GO:0030030 1.762065e-09 1.0000000 283
94 GO:0044271 1.952862e-09 1.0000000 679
95 GO:0009653 2.105831e-09 1.0000000 535
96 GO:0001654 3.182443e-09 1.0000000 173
97 GO:0048880 3.182443e-09 1.0000000 173
98 GO:0150063 3.182443e-09 1.0000000 173
99 GO:0048749 3.189137e-09 1.0000000 166
100 GO:1901362 3.380417e-09 1.0000000 487
101 GO:0120036 5.119338e-09 1.0000000 276
102 GO:0048583 6.400772e-09 1.0000000 361
103 GO:0007423 7.168993e-09 1.0000000 201
104 GO:0007389 8.613332e-09 1.0000000 208
105 GO:0007049 9.148468e-09 1.0000000 259
106 GO:0022402 1.038824e-08 1.0000000 218
107 GO:0097159 1.250326e-08 1.0000000 933
108 GO:0032504 1.701334e-08 1.0000000 387
109 GO:0008038 1.805142e-08 1.0000000 67
110 GO:0009893 1.900991e-08 1.0000000 311
111 GO:0006351 2.699895e-08 1.0000000 397
112 GO:0110165 2.917484e-08 1.0000000 2606
113 GO:0010604 3.321888e-08 1.0000000 283
114 GO:0032774 3.591136e-08 1.0000000 397
115 GO:0048477 3.672253e-08 1.0000000 213
116 GO:0006366 3.919822e-08 1.0000000 325
117 GO:0003002 4.748084e-08 1.0000000 195
118 GO:0009790 4.777156e-08 1.0000000 211
119 GO:0010629 4.940226e-08 1.0000000 189
120 GO:0007281 5.155250e-08 1.0000000 252
121 GO:0007292 5.456368e-08 1.0000000 228
122 GO:0008037 6.434650e-08 1.0000000 68
123 GO:0009887 6.705327e-08 1.0000000 288
124 GO:0009966 6.847225e-08 1.0000000 293
125 GO:0051301 1.062773e-07 1.0000000 110
126 GO:0070013 2.052889e-07 1.0000000 322
127 GO:0010608 2.097300e-07 1.0000000 128
128 GO:0031974 2.263536e-07 1.0000000 322
129 GO:0043233 2.263536e-07 1.0000000 322
130 GO:0019953 2.747114e-07 1.0000000 387
131 GO:0048232 2.779215e-07 1.0000000 126
132 GO:0031325 2.909081e-07 1.0000000 277
133 GO:0016358 3.152806e-07 0.9999999 84
134 GO:0001745 3.287813e-07 1.0000000 136
135 GO:0006355 3.422717e-07 1.0000000 359
136 GO:2001141 3.422717e-07 1.0000000 359
137 GO:0048592 4.860566e-07 1.0000000 139
138 GO:0090596 4.860566e-07 1.0000000 139
139 GO:0045165 5.366803e-07 1.0000000 137
140 GO:0006996 5.371193e-07 0.9999998 527
141 GO:0048585 5.436825e-07 1.0000000 171
142 GO:0050793 5.603653e-07 1.0000000 258
143 GO:0000226 6.182063e-07 1.0000000 140
144 GO:0000280 6.708722e-07 1.0000000 109
145 GO:0007283 7.636957e-07 1.0000000 112
146 GO:0012505 7.640919e-07 0.9999997 384
147 GO:0051641 8.058591e-07 0.9999997 376
148 GO:0051248 8.216694e-07 0.9999997 67
149 GO:0006357 1.040675e-06 0.9999996 295
150 GO:0048285 1.432505e-06 0.9999995 115
151 GO:0031981 1.455065e-06 0.9999992 267
152 GO:0010646 1.463481e-06 0.9999992 331
153 GO:0016071 1.577159e-06 0.9999994 161
154 GO:0000003 1.977266e-06 0.9999987 467
155 GO:0051321 2.026695e-06 0.9999993 88
156 GO:1903311 2.152512e-06 0.9999990 77
157 GO:1990904 2.209847e-06 0.9999988 209
158 GO:0051173 2.529366e-06 0.9999986 251
159 GO:0044085 2.624818e-06 0.9999982 478
160 GO:0005654 2.938740e-06 0.9999985 160
161 GO:0048813 3.014055e-06 0.9999986 75
162 GO:0023051 3.130588e-06 0.9999980 328
163 GO:0048732 3.184551e-06 0.9999985 78
164 GO:0051239 3.365735e-06 0.9999980 225
165 GO:0006396 4.269650e-06 0.9999973 235
166 GO:0051960 4.974241e-06 0.9999978 94
167 GO:0008356 5.273582e-06 0.9999979 51
168 GO:0007017 6.257258e-06 0.9999963 177
169 GO:0031047 8.069887e-06 0.9999961 82
170 GO:0022607 9.404429e-06 0.9999932 419
171 GO:0045595 9.499095e-06 0.9999948 117
172 GO:0051128 9.945066e-06 0.9999933 254
173 GO:0007167 1.130274e-05 0.9999937 124
174 GO:0007552 1.177583e-05 0.9999927 182
175 GO:0000278 1.282337e-05 0.9999921 165
176 GO:0009057 1.324451e-05 0.9999914 194
177 GO:0046426 1.525645e-05 0.9999982 15
178 GO:1904893 1.525645e-05 0.9999982 15
179 GO:0009968 1.531542e-05 0.9999908 150
180 GO:0043488 1.665398e-05 0.9999942 37
181 GO:0032434 1.703723e-05 0.9999950 29
182 GO:0005667 1.813358e-05 0.9999906 87
183 GO:0007010 1.944105e-05 0.9999870 233
184 GO:0009886 1.989875e-05 0.9999874 178
185 GO:0016441 2.187080e-05 0.9999890 69
186 GO:0035282 2.319962e-05 0.9999874 97
187 GO:2000026 2.355102e-05 0.9999866 114
188 GO:0061013 2.527859e-05 0.9999909 37
189 GO:0007447 2.617114e-05 0.9999887 55
190 GO:0140110 2.657812e-05 0.9999816 247
191 GO:1903046 2.821571e-05 0.9999856 79
192 GO:0009880 2.846085e-05 0.9999850 88
193 GO:0030055 2.967596e-05 0.9999929 25
194 GO:0016442 3.079093e-05 0.9999879 39
195 GO:0031332 3.079093e-05 0.9999879 39
196 GO:0010648 3.084604e-05 0.9999807 157
197 GO:0007051 3.385003e-05 0.9999844 57
198 GO:0070727 3.425254e-05 0.9999760 251
199 GO:2000241 3.463168e-05 0.9999845 55
200 GO:0061136 3.554588e-05 0.9999881 32
201 GO:0035194 3.845965e-05 0.9999806 65
202 GO:0035222 4.045355e-05 0.9999845 42
203 GO:0003723 4.059249e-05 0.9999703 303
204 GO:0046425 4.112219e-05 0.9999909 21
205 GO:0043487 4.402744e-05 0.9999833 38
206 GO:0007059 4.432855e-05 0.9999765 82
207 GO:0009967 4.456815e-05 0.9999715 160
208 GO:0035220 4.642452e-05 0.9999707 154
209 GO:0019827 5.130651e-05 0.9999778 50
210 GO:0098727 5.130651e-05 0.9999778 50
211 GO:0005829 5.266351e-05 0.9999601 375
212 GO:0048707 5.302016e-05 0.9999655 171
213 GO:0048608 5.610348e-05 0.9999782 42
214 GO:0061458 5.610348e-05 0.9999782 42
215 GO:0023057 5.636977e-05 0.9999638 155
216 GO:0030162 6.004961e-05 0.9999724 52
217 GO:0009894 6.085076e-05 0.9999634 115
218 GO:0008406 6.285860e-05 0.9999811 29
219 GO:0045137 6.285860e-05 0.9999811 29
220 GO:0010647 6.371080e-05 0.9999581 171
221 GO:0007444 6.387145e-05 0.9999560 216
222 GO:0048841 6.394927e-05 0.9999975 10
223 GO:0198738 6.587649e-05 0.9999684 60
224 GO:0065009 6.894752e-05 0.9999621 86
225 GO:0048584 7.121539e-05 0.9999512 204
226 GO:0016198 7.273964e-05 0.9999854 20
227 GO:0035120 7.490886e-05 0.9999539 131
228 GO:0042176 7.506105e-05 0.9999696 40
229 GO:0023056 7.663729e-05 0.9999493 170
230 GO:0035195 7.723195e-05 0.9999625 54
231 GO:0051253 7.727009e-05 0.9999524 124
232 GO:0007476 8.618096e-05 0.9999485 115
233 GO:1904892 8.837673e-05 0.9999786 21
234 GO:0043565 8.982114e-05 0.9999372 215
235 GO:0051716 9.023095e-05 0.9999274 613
236 GO:0009791 9.190970e-05 0.9999349 234
237 GO:2000058 9.423115e-05 0.9999660 32
238 GO:0001700 9.941086e-05 0.9999479 73
239 GO:0007417 1.046985e-04 0.9999368 113
240 GO:0005730 1.083919e-04 0.9999342 104
241 GO:0051649 1.115430e-04 0.9999197 244
242 GO:0009896 1.130601e-04 0.9999385 76
243 GO:0040012 1.171684e-04 0.9999444 57
244 GO:0001751 1.173502e-04 0.9999349 86
245 GO:0007350 1.177126e-04 0.9999353 80
246 GO:0033206 1.212435e-04 0.9999656 23
247 GO:1901799 1.228480e-04 0.9999921 9
248 GO:0070161 1.288617e-04 0.9999330 70
249 GO:1902494 1.292209e-04 0.9999014 347
250 GO:0030718 1.298342e-04 0.9999469 40
251 GO:0005575 1.304355e-04 0.9999003 2996
252 GO:0031090 1.326789e-04 0.9999031 253
253 GO:0071011 1.340038e-04 0.9999343 55
254 GO:0045934 1.340205e-04 0.9999150 129
255 GO:0030163 1.447518e-04 0.9999068 130
256 GO:0051338 1.465311e-04 0.9999470 32
257 GO:0048736 1.476898e-04 0.9999059 136
258 GO:0034329 1.559218e-04 0.9999092 96
259 GO:0035107 1.584815e-04 0.9998993 133
260 GO:0009792 1.595526e-04 0.9999136 75
261 GO:0046907 1.608002e-04 0.9998876 193
262 GO:0060341 1.620606e-04 0.9999146 68
263 GO:0016055 1.627406e-04 0.9999201 57
264 GO:0043161 1.631038e-04 0.9999075 80
265 GO:0007140 1.636107e-04 0.9999373 33
266 GO:0044087 1.792714e-04 0.9998886 116
267 GO:0007416 1.799952e-04 0.9999013 77
268 GO:0008380 1.807040e-04 0.9998885 107
269 GO:0035114 1.830902e-04 0.9998833 132
270 GO:0007277 1.832770e-04 0.9999580 18
271 GO:0010557 1.857042e-04 0.9998692 201
272 GO:0070848 1.857091e-04 0.9999134 51
273 GO:0071363 1.857091e-04 0.9999134 51
274 GO:0001754 1.928430e-04 0.9998901 87
275 GO:1903050 1.998116e-04 0.9999195 35
276 GO:0048729 2.034253e-04 0.9998684 137
277 GO:0046530 2.058544e-04 0.9998790 95
278 GO:0051603 2.146732e-04 0.9998617 123
279 GO:0043632 2.153902e-04 0.9998650 110
280 GO:0010975 2.158877e-04 0.9998940 56
281 GO:0051254 2.162100e-04 0.9998511 175
282 GO:0048737 2.209822e-04 0.9998576 134
283 GO:0045182 2.230603e-04 0.9998797 64
284 GO:0001067 2.253284e-04 0.9998430 185
285 GO:0005783 2.322541e-04 0.9998402 166
286 GO:0033036 2.361298e-04 0.9998213 304
287 GO:0051726 2.446573e-04 0.9998498 103
288 GO:0051225 2.515892e-04 0.9999028 32
289 GO:0061157 2.521487e-04 0.9999098 28
290 GO:0009891 2.524140e-04 0.9998202 206
291 GO:0006935 2.592692e-04 0.9999092 30
292 GO:0005819 2.600368e-04 0.9998763 48
293 GO:0007472 2.620049e-04 0.9998356 117
294 GO:0007507 2.672556e-04 0.9998743 50
295 GO:0072359 2.672556e-04 0.9998743 50
296 GO:0140014 2.815888e-04 0.9998567 56
297 GO:0001709 2.832920e-04 0.9998586 56
298 GO:0000976 2.895706e-04 0.9997972 184
299 GO:0031328 2.904934e-04 0.9997924 205
300 GO:0019941 2.915910e-04 0.9998166 107
301 GO:0065008 3.024871e-04 0.9997707 303
302 GO:0045742 3.076249e-04 0.9999562 12
303 GO:1901186 3.076249e-04 0.9999562 12
304 GO:0060284 3.159851e-04 0.9998250 72
305 GO:0060070 3.171476e-04 0.9998469 50
306 GO:0050896 3.205401e-04 0.9997310 836
307 GO:0043412 3.206531e-04 0.9997529 330
308 GO:0016199 3.258816e-04 0.9999279 18
309 GO:1990837 3.333974e-04 0.9997639 191
310 GO:0007431 3.394149e-04 0.9998412 48
311 GO:0035272 3.394149e-04 0.9998412 48
312 GO:0019094 3.432986e-04 0.9998834 26
313 GO:0003690 3.434099e-04 0.9997547 199
314 GO:0050803 3.436411e-04 0.9998012 82
315 GO:0000375 3.509044e-04 0.9997821 99
316 GO:0000377 3.509044e-04 0.9997821 99
317 GO:0000398 3.509044e-04 0.9997821 99
318 GO:0045448 3.530128e-04 0.9998973 21
319 GO:0060429 3.531388e-04 0.9997475 206
320 GO:0042177 3.567654e-04 0.9999582 10
321 GO:0051129 3.603894e-04 0.9998060 65
322 GO:0051124 3.610599e-04 0.9998081 64
323 GO:0008104 3.663961e-04 0.9997311 229
324 GO:0006511 3.701456e-04 0.9997664 105
325 GO:0000149 3.716216e-04 0.9998768 24
326 GO:0000922 3.873694e-04 0.9998902 20
327 GO:0008039 3.952083e-04 0.9998644 28
328 GO:0003730 3.959169e-04 0.9998082 45
329 GO:0008134 4.028477e-04 0.9997828 64
330 GO:0008593 4.117859e-04 0.9998249 36
331 GO:1903047 4.121593e-04 0.9997349 114
332 GO:0006417 4.198633e-04 0.9997784 58
333 GO:0045935 4.211576e-04 0.9997023 182
334 GO:0050779 4.235028e-04 0.9998419 28
335 GO:0003677 4.453503e-04 0.9996566 315
336 GO:0060828 4.530981e-04 0.9997902 43
337 GO:0009953 4.614616e-04 0.9997513 63
338 GO:0009888 4.644884e-04 0.9996581 236
339 GO:0044093 4.645234e-04 0.9997629 54
340 GO:0042802 4.785101e-04 0.9997485 58
341 GO:0007169 4.862425e-04 0.9997071 90
342 GO:0003700 5.054840e-04 0.9996396 187
343 GO:0070593 5.094637e-04 0.9999094 14
344 GO:0030111 5.099584e-04 0.9997529 47
345 GO:0007316 5.254316e-04 0.9998141 26
346 GO:0061014 5.264039e-04 0.9997993 28
347 GO:0033301 5.384637e-04 0.9998732 16
348 GO:0034248 5.403699e-04 0.9996873 74
349 GO:0019843 5.510634e-04 0.9998188 21
350 GO:0006402 5.516231e-04 0.9997245 48
351 GO:0007173 5.521612e-04 0.9997631 37
352 GO:0038127 5.521612e-04 0.9997631 37
353 GO:0045892 5.610199e-04 0.9996378 113
354 GO:1902679 5.610199e-04 0.9996378 113
355 GO:0007560 5.612791e-04 0.9996155 154
356 GO:0006595 5.650500e-04 1.0000000 5
357 GO:0006596 5.650500e-04 1.0000000 5
358 GO:0048859 5.695469e-04 0.9997895 29
359 GO:0051240 5.704497e-04 0.9996623 82
360 GO:0002009 5.805238e-04 0.9996182 126
361 GO:0097305 5.817636e-04 0.9997145 48
362 GO:0098772 5.979131e-04 0.9995624 208
363 GO:0006397 5.983862e-04 0.9996084 114
364 GO:0010498 6.346777e-04 0.9996053 91
365 GO:0045451 6.614467e-04 0.9997740 24
366 GO:0090287 6.740267e-04 0.9997189 34
367 GO:0000915 6.787781e-04 0.9999127 10
368 GO:0007219 6.798157e-04 0.9996854 40
369 GO:0042803 6.832962e-04 0.9996569 49
370 GO:0140013 6.840098e-04 0.9996219 61
371 GO:0050920 6.841238e-04 0.9998213 18
372 GO:0003007 6.843112e-04 0.9997848 22
373 GO:0098813 7.249330e-04 0.9995930 64
374 GO:0071013 7.300320e-04 0.9996302 47
375 GO:0009952 7.570236e-04 0.9995553 76
376 GO:0030555 7.642887e-04 0.9998904 9
377 GO:0005681 8.106590e-04 0.9995345 66
378 GO:0007165 8.463320e-04 0.9993112 477
379 GO:0060322 8.497717e-04 0.9995346 61
380 GO:1901889 8.718965e-04 0.9997007 24
381 GO:0071732 8.827225e-04 1.0000000 4
382 GO:1902170 8.827225e-04 1.0000000 4
383 GO:1901888 8.929757e-04 0.9995268 55
384 GO:0005927 9.011095e-04 0.9998887 11
385 GO:0071495 9.075097e-04 0.9994252 98
386 GO:0010564 9.177967e-04 0.9994565 74
387 GO:1901700 9.431849e-04 0.9993680 122
388 GO:0007412 9.576086e-04 0.9998868 10
389 GO:1903313 9.639217e-04 0.9996043 29
390 GO:0006950 9.687037e-04 0.9992251 379
391 GO:0031399 9.716517e-04 0.9995077 46
392 GO:0016192 9.880995e-04 0.9992839 182
393 GO:0007154 1.005489e-03 0.9991672 566
394 GO:0045116 1.009204e-03 0.9998711 9
395 GO:0023052 1.010687e-03 0.9991648 550
396 GO:0051961 1.019629e-03 0.9995196 41
397 GO:0007419 1.032507e-03 0.9995491 35
398 GO:0007156 1.041643e-03 0.9996225 27
399 GO:1901701 1.044994e-03 0.9993785 74
400 GO:0000819 1.053898e-03 0.9994635 46
401 GO:0030234 1.057582e-03 0.9992516 155
402 GO:0007259 1.067175e-03 0.9996525 21
403 GO:2000434 1.068752e-03 1.0000000 5
404 GO:0048846 1.089477e-03 0.9998165 12
405 GO:1902284 1.089477e-03 0.9998165 12
406 GO:0060810 1.097982e-03 0.9995526 29
407 GO:0000977 1.115071e-03 0.9992057 163
408 GO:0032435 1.135852e-03 0.9999127 7
409 GO:0045786 1.148621e-03 0.9994461 40
410 GO:0036211 1.150885e-03 0.9991011 297
411 GO:0009113 1.161928e-03 1.0000000 5
412 GO:0051247 1.170966e-03 0.9993180 66
413 GO:0048863 1.176145e-03 0.9995309 29
414 GO:0030509 1.180644e-03 0.9995135 30
415 GO:0071772 1.180644e-03 0.9995135 30
416 GO:0071773 1.180644e-03 0.9995135 30
417 GO:0010160 1.214114e-03 0.9995711 24
418 GO:0051094 1.214909e-03 0.9992322 92
419 GO:0045859 1.221936e-03 0.9996171 19
420 GO:0043549 1.232483e-03 0.9995177 27
421 GO:0140513 1.240154e-03 0.9990462 254
422 GO:0005925 1.250279e-03 0.9996859 16
423 GO:0098609 1.251901e-03 0.9992962 64
424 GO:0017147 1.253406e-03 0.9997687 12
425 GO:0045495 1.307750e-03 0.9994892 26
426 GO:0042058 1.311619e-03 0.9994907 27
427 GO:1901184 1.311619e-03 0.9994907 27
428 GO:0007112 1.312364e-03 0.9996150 17
429 GO:0007163 1.343850e-03 0.9991865 78
430 GO:0043085 1.366334e-03 0.9992962 47
431 GO:0051962 1.399721e-03 0.9992780 47
432 GO:0044837 1.449045e-03 0.9996214 15
433 GO:0007391 1.454809e-03 0.9992616 46
434 GO:0030097 1.456921e-03 0.9993011 39
435 GO:0000288 1.481944e-03 0.9995488 18
436 GO:0009719 1.496465e-03 0.9990296 99
437 GO:0043933 1.496907e-03 0.9988294 280
438 GO:1901575 1.512299e-03 0.9988224 273
439 GO:0061024 1.570392e-03 0.9989695 99
440 GO:0141091 1.608759e-03 0.9992931 32
441 GO:0050919 1.646526e-03 0.9996243 14
442 GO:0009056 1.664501e-03 0.9986732 330
443 GO:0048193 1.669346e-03 0.9990664 54
444 GO:0051963 1.671209e-03 0.9990929 53
445 GO:0051964 1.720848e-03 0.9993818 23
446 GO:1905809 1.720848e-03 0.9993818 23
447 GO:0098588 1.763803e-03 0.9987898 119
448 GO:0016331 1.795721e-03 0.9990327 52
449 GO:0097696 1.795942e-03 0.9993790 21
450 GO:0051783 1.796028e-03 0.9993028 24
451 GO:0010256 1.809359e-03 0.9988866 75
452 GO:0051093 1.871635e-03 0.9988276 84
453 GO:0002165 1.874643e-03 0.9986090 195
454 GO:0061983 1.878858e-03 0.9996301 11
455 GO:0008582 1.893386e-03 0.9989856 50
numInCat
1 7277
2 5090
3 5282
4 8664
5 1406
6 1675
7 5867
8 1676
9 5363
10 4115
11 5987
12 4363
13 2233
14 2062
15 801
16 3813
17 4031
18 869
19 4051
20 3988
21 1627
22 3526
23 1484
24 3024
25 2082
26 936
27 629
28 1735
29 1709
30 3268
31 5973
32 2732
33 4950
34 1519
35 1157
36 1788
37 482
38 2594
39 1748
40 2823
41 3180
42 1812
43 3384
44 1773
45 2041
46 2702
47 2903
48 1823
49 2304
50 2999
51 2457
52 946
53 5062
54 1577
55 5344
56 435
57 6480
58 439
59 2243
60 6149
61 437
62 2702
63 893
64 431
65 3138
66 1188
67 551
68 946
69 343
70 323
71 930
72 1277
73 952
74 569
75 5695
76 2232
77 901
78 3548
79 258
80 403
81 1267
82 802
83 714
84 810
85 506
86 1328
87 266
88 815
89 872
90 1380
91 1444
92 1454
93 728
94 2296
95 1532
96 404
97 404
98 404
99 385
100 1492
101 714
102 1029
103 494
104 523
105 735
106 603
107 3256
108 1158
109 118
110 897
111 1193
112 9929
113 810
114 1196
115 562
116 950
117 495
118 540
119 544
120 701
121 613
122 124
123 757
124 821
125 264
126 1056
127 358
128 1057
129 1057
130 1217
131 342
132 802
133 177
134 321
135 1080
136 1080
137 331
138 331
139 328
140 1708
141 454
142 700
143 369
144 282
145 302
146 1235
147 1167
148 151
149 868
150 304
151 855
152 961
153 465
154 1502
155 220
156 180
157 677
158 736
159 1570
160 458
161 160
162 956
163 167
164 610
165 756
166 219
167 105
168 499
169 234
170 1358
171 287
172 720
173 309
174 471
175 472
176 596
177 20
178 20
179 403
180 77
181 56
182 224
183 655
184 460
185 196
186 235
187 285
188 78
189 113
190 727
191 204
192 211
193 39
194 99
195 99
196 428
197 135
198 775
199 121
200 66
201 187
202 82
203 1087
204 34
205 82
206 212
207 435
208 397
209 107
210 107
211 1309
212 445
213 81
214 81
215 426
216 129
217 319
218 50
219 50
220 471
221 588
222 11
223 136
224 218
225 588
226 29
227 325
228 90
229 469
230 159
231 332
232 281
233 35
234 632
235 1999
236 661
237 69
238 168
239 288
240 326
241 758
242 199
243 121
244 205
245 195
246 43
247 11
248 157
249 1194
250 84
251 11915
252 848
253 141
254 354
255 395
256 64
257 344
258 236
259 336
260 177
261 597
262 164
263 131
264 226
265 73
266 305
267 181
268 314
269 334
270 30
271 594
272 110
273 110
274 210
275 80
276 354
277 233
278 374
279 329
280 125
281 510
282 341
283 187
284 539
285 530
286 977
287 286
288 70
289 60
290 615
291 55
292 116
293 294
294 107
295 107
296 140
297 127
298 538
299 613
300 321
301 917
302 17
303 17
304 177
305 115
306 2874
307 1099
308 27
309 563
310 102
311 102
312 51
313 594
314 206
315 293
316 293
317 293
318 39
319 577
320 14
321 158
322 149
323 727
324 316
325 49
326 37
327 50
328 122
329 157
330 81
331 330
332 150
333 540
334 61
335 1042
336 98
337 153
338 672
339 129
340 141
341 229
342 548
343 20
344 109
345 52
346 62
347 27
348 201
349 48
350 122
351 77
352 77
353 311
354 311
355 410
356 5
357 5
358 55
359 211
360 329
361 110
362 657
363 346
364 272
365 47
366 70
367 14
368 93
369 116
370 165
371 30
372 40
373 171
374 124
375 195
376 15
377 188
378 1532
379 146
380 45
381 4
382 4
383 130
384 14
385 261
386 201
387 349
388 13
389 67
390 1291
391 116
392 558
393 1838
394 13
395 1784
396 89
397 73
398 48
399 198
400 116
401 479
402 40
403 5
404 17
405 17
406 63
407 480
408 9
409 97
410 989
411 5
412 184
413 58
414 63
415 63
416 63
417 45
418 247
419 37
420 56
421 878
422 26
423 147
424 18
425 56
426 54
427 54
428 33
429 198
430 112
431 112
432 27
433 104
434 90
435 34
436 268
437 983
438 926
439 296
440 70
441 22
442 1127
443 151
444 127
445 44
446 44
447 370
448 121
449 41
450 53
451 212
452 216
453 560
454 18
455 119
term
1 intracellular anatomical structure
2 intracellular membrane-bounded organelle
3 membrane-bounded organelle
4 cellular process
5 cell development
6 cell differentiation
7 intracellular organelle
8 cellular developmental process
9 cellular metabolic process
10 regulation of biological process
11 organelle
12 biological regulation
13 regulation of metabolic process
14 regulation of macromolecule metabolic process
15 neuron differentiation
16 regulation of cellular process
17 organic substance biosynthetic process
18 generation of neurons
19 biosynthetic process
20 cellular biosynthetic process
21 negative regulation of biological process
22 macromolecule biosynthetic process
23 system development
24 nucleus
25 regulation of cellular metabolic process
26 neurogenesis
27 neuron development
28 regulation of primary metabolic process
29 regulation of nitrogen compound metabolic process
30 gene expression
31 binding
32 cellular aromatic compound metabolic process
33 cytoplasm
34 negative regulation of cellular process
35 nervous system development
36 regulation of macromolecule biosynthetic process
37 neuron projection development
38 nucleobase-containing compound metabolic process
39 positive regulation of biological process
40 organic cyclic compound metabolic process
41 cellular component organization or biogenesis
42 regulation of cellular biosynthetic process
43 cellular nitrogen compound metabolic process
44 regulation of gene expression
45 RNA metabolic process
46 heterocycle metabolic process
47 developmental process
48 regulation of biosynthetic process
49 nucleic acid metabolic process
50 cellular component organization
51 protein binding
52 developmental process involved in reproduction
53 macromolecule metabolic process
54 positive regulation of cellular process
55 nitrogen compound metabolic process
56 neuron projection morphogenesis
57 metabolic process
58 cell projection morphogenesis
59 multicellular organism development
60 organic substance metabolic process
61 plasma membrane bounded cell projection morphogenesis
62 anatomical structure development
63 negative regulation of macromolecule metabolic process
64 cell morphogenesis involved in neuron differentiation
65 protein-containing complex
66 animal organ development
67 cell morphogenesis
68 negative regulation of metabolic process
69 axon development
70 axonogenesis
71 gamete generation
72 reproductive process
73 multicellular organismal reproductive process
74 cellular anatomical entity morphogenesis
75 primary metabolic process
76 nucleic acid binding
77 negative regulation of cellular metabolic process
78 multicellular organismal process
79 axon guidance
80 regulation of protein metabolic process
81 regulation of RNA metabolic process
82 negative regulation of macromolecule biosynthetic process
83 cell surface receptor signaling pathway
84 negative regulation of cellular biosynthetic process
85 negative regulation of nitrogen compound metabolic process
86 regulation of nucleobase-containing compound metabolic process
87 neuron projection guidance
88 negative regulation of biosynthetic process
89 cellular process involved in reproduction in multicellular organism
90 nucleobase-containing compound biosynthetic process
91 aromatic compound biosynthetic process
92 heterocycle biosynthetic process
93 cell projection organization
94 cellular nitrogen compound biosynthetic process
95 anatomical structure morphogenesis
96 eye development
97 sensory system development
98 visual system development
99 compound eye development
100 organic cyclic compound biosynthetic process
101 plasma membrane bounded cell projection organization
102 regulation of response to stimulus
103 sensory organ development
104 pattern specification process
105 cell cycle
106 cell cycle process
107 organic cyclic compound binding
108 multicellular organism reproduction
109 neuron recognition
110 positive regulation of metabolic process
111 DNA-templated transcription
112 cellular anatomical entity
113 positive regulation of macromolecule metabolic process
114 RNA biosynthetic process
115 oogenesis
116 transcription by RNA polymerase II
117 regionalization
118 embryo development
119 negative regulation of gene expression
120 germ cell development
121 female gamete generation
122 cell recognition
123 animal organ morphogenesis
124 regulation of signal transduction
125 cell division
126 intracellular organelle lumen
127 post-transcriptional regulation of gene expression
128 membrane-enclosed lumen
129 organelle lumen
130 sexual reproduction
131 male gamete generation
132 positive regulation of cellular metabolic process
133 dendrite development
134 compound eye morphogenesis
135 regulation of DNA-templated transcription
136 regulation of RNA biosynthetic process
137 eye morphogenesis
138 sensory organ morphogenesis
139 cell fate commitment
140 organelle organization
141 negative regulation of response to stimulus
142 regulation of developmental process
143 microtubule cytoskeleton organization
144 nuclear division
145 spermatogenesis
146 endomembrane system
147 cellular localization
148 negative regulation of protein metabolic process
149 regulation of transcription by RNA polymerase II
150 organelle fission
151 nuclear lumen
152 regulation of cell communication
153 mRNA metabolic process
154 reproduction
155 meiotic cell cycle
156 regulation of mRNA metabolic process
157 ribonucleoprotein complex
158 positive regulation of nitrogen compound metabolic process
159 cellular component biogenesis
160 nucleoplasm
161 dendrite morphogenesis
162 regulation of signaling
163 gland development
164 regulation of multicellular organismal process
165 RNA processing
166 regulation of nervous system development
167 asymmetric cell division
168 microtubule-based process
169 regulatory ncRNA-mediated gene silencing
170 cellular component assembly
171 regulation of cell differentiation
172 regulation of cellular component organization
173 enzyme-linked receptor protein signaling pathway
174 metamorphosis
175 mitotic cell cycle
176 macromolecule catabolic process
177 negative regulation of receptor signaling pathway via JAK-STAT
178 negative regulation of receptor signaling pathway via STAT
179 negative regulation of signal transduction
180 regulation of mRNA stability
181 regulation of proteasomal ubiquitin-dependent protein catabolic process
182 transcription regulator complex
183 cytoskeleton organization
184 post-embryonic animal morphogenesis
185 post-transcriptional gene silencing
186 segmentation
187 regulation of multicellular organismal development
188 regulation of mRNA catabolic process
189 imaginal disc pattern formation
190 transcription regulator activity
191 meiotic cell cycle process
192 embryonic pattern specification
193 cell-substrate junction
194 RISC complex
195 RNAi effector complex
196 negative regulation of cell communication
197 spindle organization
198 cellular macromolecule localization
199 regulation of reproductive process
200 regulation of proteasomal protein catabolic process
201 regulatory ncRNA-mediated post-transcriptional gene silencing
202 wing disc pattern formation
203 RNA binding
204 regulation of receptor signaling pathway via JAK-STAT
205 regulation of RNA stability
206 chromosome segregation
207 positive regulation of signal transduction
208 wing disc development
209 stem cell population maintenance
210 maintenance of cell number
211 cytosol
212 instar larval or pupal morphogenesis
213 reproductive structure development
214 reproductive system development
215 negative regulation of signaling
216 regulation of proteolysis
217 regulation of catabolic process
218 gonad development
219 development of primary sexual characteristics
220 positive regulation of cell communication
221 imaginal disc development
222 regulation of axon extension involved in axon guidance
223 cell-cell signaling by wnt
224 regulation of molecular function
225 positive regulation of response to stimulus
226 axon choice point recognition
227 post-embryonic appendage morphogenesis
228 regulation of protein catabolic process
229 positive regulation of signaling
230 miRNA-mediated post-transcriptional gene silencing
231 negative regulation of RNA metabolic process
232 imaginal disc-derived wing morphogenesis
233 regulation of receptor signaling pathway via STAT
234 sequence-specific DNA binding
235 cellular response to stimulus
236 post-embryonic development
237 regulation of ubiquitin-dependent protein catabolic process
238 embryonic development via the syncytial blastoderm
239 central nervous system development
240 nucleolus
241 establishment of localization in cell
242 positive regulation of catabolic process
243 regulation of locomotion
244 compound eye photoreceptor cell differentiation
245 blastoderm segmentation
246 meiotic cytokinesis
247 negative regulation of proteasomal protein catabolic process
248 anchoring junction
249 catalytic complex
250 germ-line stem cell population maintenance
251 cellular_component
252 organelle membrane
253 precatalytic spliceosome
254 negative regulation of nucleobase-containing compound metabolic process
255 protein catabolic process
256 regulation of transferase activity
257 appendage development
258 cell junction assembly
259 appendage morphogenesis
260 embryo development ending in birth or egg hatching
261 intracellular transport
262 regulation of cellular localization
263 Wnt signaling pathway
264 proteasome-mediated ubiquitin-dependent protein catabolic process
265 male meiotic nuclear division
266 regulation of cellular component biogenesis
267 synapse assembly
268 RNA splicing
269 imaginal disc-derived appendage morphogenesis
270 pole cell development
271 positive regulation of macromolecule biosynthetic process
272 response to growth factor
273 cellular response to growth factor stimulus
274 eye photoreceptor cell differentiation
275 regulation of proteolysis involved in protein catabolic process
276 tissue morphogenesis
277 photoreceptor cell differentiation
278 proteolysis involved in protein catabolic process
279 modification-dependent macromolecule catabolic process
280 regulation of neuron projection development
281 positive regulation of RNA metabolic process
282 imaginal disc-derived appendage development
283 translation regulator activity
284 transcription regulatory region nucleic acid binding
285 endoplasmic reticulum
286 macromolecule localization
287 regulation of cell cycle
288 spindle assembly
289 mRNA destabilization
290 positive regulation of biosynthetic process
291 chemotaxis
292 spindle
293 wing disc morphogenesis
294 heart development
295 circulatory system development
296 mitotic nuclear division
297 cell fate determination
298 transcription cis-regulatory region binding
299 positive regulation of cellular biosynthetic process
300 modification-dependent protein catabolic process
301 regulation of biological quality
302 positive regulation of epidermal growth factor receptor signaling pathway
303 positive regulation of ERBB signaling pathway
304 regulation of cell development
305 canonical Wnt signaling pathway
306 response to stimulus
307 macromolecule modification
308 axon midline choice point recognition
309 sequence-specific double-stranded DNA binding
310 salivary gland development
311 exocrine system development
312 pole plasm mRNA localization
313 double-stranded DNA binding
314 regulation of synapse structure or activity
315 RNA splicing, via transesterification reactions
316 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
317 mRNA splicing, via spliceosome
318 mitotic cell cycle, embryonic
319 epithelium development
320 negative regulation of protein catabolic process
321 negative regulation of cellular component organization
322 synaptic assembly at neuromuscular junction
323 protein localization
324 ubiquitin-dependent protein catabolic process
325 SNARE binding
326 spindle pole
327 synaptic target recognition
328 mRNA 3'-UTR binding
329 transcription factor binding
330 regulation of Notch signaling pathway
331 mitotic cell cycle process
332 regulation of translation
333 positive regulation of nucleobase-containing compound metabolic process
334 RNA destabilization
335 DNA binding
336 regulation of canonical Wnt signaling pathway
337 dorsal/ventral pattern formation
338 tissue development
339 positive regulation of molecular function
340 identical protein binding
341 transmembrane receptor protein tyrosine kinase signaling pathway
342 DNA-binding transcription factor activity
343 dendrite self-avoidance
344 regulation of Wnt signaling pathway
345 pole plasm RNA localization
346 positive regulation of mRNA catabolic process
347 cell cycle comprising mitosis without cytokinesis
348 regulation of amide metabolic process
349 rRNA binding
350 mRNA catabolic process
351 epidermal growth factor receptor signaling pathway
352 ERBB signaling pathway
353 negative regulation of DNA-templated transcription
354 negative regulation of RNA biosynthetic process
355 imaginal disc morphogenesis
356 polyamine metabolic process
357 polyamine biosynthetic process
358 formation of anatomical boundary
359 positive regulation of multicellular organismal process
360 morphogenesis of an epithelium
361 response to alcohol
362 molecular function regulator activity
363 mRNA processing
364 proteasomal protein catabolic process
365 pole plasm oskar mRNA localization
366 regulation of cellular response to growth factor stimulus
367 actomyosin contractile ring assembly
368 Notch signaling pathway
369 protein homodimerization activity
370 meiotic nuclear division
371 regulation of chemotaxis
372 heart morphogenesis
373 nuclear chromosome segregation
374 catalytic step 2 spliceosome
375 anterior/posterior pattern specification
376 RNA modification guide activity
377 spliceosomal complex
378 signal transduction
379 head development
380 negative regulation of cell junction assembly
381 cellular response to nitric oxide
382 cellular response to reactive nitrogen species
383 regulation of cell junction assembly
384 muscle tendon junction
385 cellular response to endogenous stimulus
386 regulation of cell cycle process
387 response to oxygen-containing compound
388 axon target recognition
389 positive regulation of mRNA metabolic process
390 response to stress
391 regulation of protein modification process
392 vesicle-mediated transport
393 cell communication
394 protein neddylation
395 signaling
396 negative regulation of nervous system development
397 ventral cord development
398 homophilic cell adhesion via plasma membrane adhesion molecules
399 cellular response to oxygen-containing compound
400 sister chromatid segregation
401 enzyme regulator activity
402 receptor signaling pathway via JAK-STAT
403 regulation of protein neddylation
404 axon extension involved in axon guidance
405 neuron projection extension involved in neuron projection guidance
406 intracellular mRNA localization involved in pattern specification process
407 RNA polymerase II transcription regulatory region sequence-specific DNA binding
408 negative regulation of proteasomal ubiquitin-dependent protein catabolic process
409 negative regulation of cell cycle
410 protein modification process
411 purine nucleobase biosynthetic process
412 positive regulation of protein metabolic process
413 stem cell differentiation
414 BMP signaling pathway
415 response to BMP
416 cellular response to BMP stimulus
417 formation of animal organ boundary
418 positive regulation of developmental process
419 regulation of protein kinase activity
420 regulation of kinase activity
421 nuclear protein-containing complex
422 focal adhesion
423 cell-cell adhesion
424 Wnt-protein binding
425 pole plasm
426 regulation of epidermal growth factor receptor signaling pathway
427 regulation of ERBB signaling pathway
428 male meiosis cytokinesis
429 establishment or maintenance of cell polarity
430 positive regulation of catalytic activity
431 positive regulation of nervous system development
432 actomyosin contractile ring organization
433 dorsal closure
434 hemopoiesis
435 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
436 response to endogenous stimulus
437 protein-containing complex organization
438 organic substance catabolic process
439 membrane organization
440 transforming growth factor beta receptor superfamily signaling pathway
441 negative chemotaxis
442 catabolic process
443 Golgi vesicle transport
444 regulation of synapse assembly
445 negative regulation of synapse assembly
446 negative regulation of synapse organization
447 bounding membrane of organelle
448 morphogenesis of embryonic epithelium
449 receptor signaling pathway via STAT
450 regulation of nuclear division
451 endomembrane system organization
452 negative regulation of developmental process
453 instar larval or pupal development
454 meiosis II cell cycle process
455 regulation of synaptic assembly at neuromuscular junction
ontology FDR
1 CC 7.762642e-24
2 CC 2.455205e-20
3 CC 9.206691e-19
4 BP 1.850730e-18
5 BP 5.664789e-17
6 BP 5.664789e-17
7 CC 5.664789e-17
8 BP 5.935744e-17
9 BP 8.455058e-16
10 BP 8.455058e-16
11 CC 8.483738e-16
12 BP 1.648741e-15
13 BP 1.824425e-15
14 BP 1.874792e-15
15 BP 3.400468e-15
16 BP 4.517790e-15
17 BP 7.197373e-15
18 BP 8.953980e-15
19 BP 1.006445e-14
20 BP 1.140454e-14
21 BP 5.506861e-14
22 BP 9.031891e-14
23 BP 1.199381e-13
24 CC 1.339297e-13
25 BP 2.409039e-13
26 BP 2.409039e-13
27 BP 3.787381e-13
28 BP 4.682621e-13
29 BP 5.244683e-13
30 BP 6.915316e-13
31 MF 7.163131e-13
32 BP 9.273526e-13
33 CC 9.394135e-13
34 BP 1.089260e-12
35 BP 1.476900e-12
36 BP 8.717469e-12
37 BP 1.105528e-11
38 BP 1.255097e-11
39 BP 1.489299e-11
40 BP 1.498833e-11
41 BP 1.570415e-11
42 BP 2.046060e-11
43 BP 2.156779e-11
44 BP 2.191472e-11
45 BP 2.421696e-11
46 BP 2.526043e-11
47 BP 2.749909e-11
48 BP 2.826920e-11
49 BP 3.545618e-11
50 BP 4.215670e-11
51 MF 5.514756e-11
52 BP 1.292782e-10
53 BP 2.916351e-10
54 BP 3.778838e-10
55 BP 4.754099e-10
56 BP 6.789748e-10
57 BP 7.000262e-10
58 BP 1.011639e-09
59 BP 1.050941e-09
60 BP 1.120903e-09
61 BP 1.120903e-09
62 BP 1.437556e-09
63 BP 1.566479e-09
64 BP 1.717554e-09
65 CC 2.740902e-09
66 BP 3.189430e-09
67 BP 4.288327e-09
68 BP 4.354616e-09
69 BP 4.399213e-09
70 BP 8.881120e-09
71 BP 9.809859e-09
72 BP 9.809859e-09
73 BP 1.569097e-08
74 BP 1.569097e-08
75 BP 1.569097e-08
76 MF 2.065569e-08
77 BP 2.642555e-08
78 BP 2.729478e-08
79 BP 3.171021e-08
80 BP 7.116058e-08
81 BP 8.897424e-08
82 BP 1.055919e-07
83 BP 1.199051e-07
84 BP 1.199051e-07
85 BP 1.199051e-07
86 BP 1.199051e-07
87 BP 1.294028e-07
88 BP 1.402623e-07
89 BP 1.402623e-07
90 BP 1.711739e-07
91 BP 2.111035e-07
92 BP 2.243433e-07
93 BP 2.254116e-07
94 BP 2.471616e-07
95 BP 2.637166e-07
96 BP 3.832441e-07
97 BP 3.832441e-07
98 BP 3.832441e-07
99 BP 3.832441e-07
100 BP 4.021682e-07
101 BP 6.030175e-07
102 BP 7.465684e-07
103 BP 8.280535e-07
104 BP 9.853155e-07
105 BP 1.036565e-06
106 BP 1.165933e-06
107 MF 1.390199e-06
108 BP 1.874146e-06
109 BP 1.970255e-06
110 BP 2.056008e-06
111 BP 2.893752e-06
112 CC 3.099046e-06
113 BP 3.497389e-06
114 BP 3.747697e-06
115 BP 3.799026e-06
116 BP 4.020183e-06
117 BP 4.816426e-06
118 BP 4.816426e-06
119 BP 4.938980e-06
120 BP 5.111001e-06
121 BP 5.364827e-06
122 BP 6.274839e-06
123 BP 6.485632e-06
124 BP 6.569471e-06
125 BP 1.011504e-05
126 CC 1.938350e-05
127 BP 1.964691e-05
128 CC 2.087542e-05
129 CC 2.087542e-05
130 BP 2.514032e-05
131 BP 2.523994e-05
132 BP 2.621920e-05
133 BP 2.820220e-05
134 BP 2.919038e-05
135 BP 2.994122e-05
136 BP 2.994122e-05
137 BP 4.190301e-05
138 BP 4.190301e-05
139 BP 4.564363e-05
140 BP 4.564363e-05
141 BP 4.587369e-05
142 BP 4.694835e-05
143 BP 5.143217e-05
144 BP 5.542616e-05
145 BP 6.226303e-05
146 CC 6.226303e-05
147 BP 6.521977e-05
148 BP 6.605000e-05
149 BP 8.309333e-05
150 BP 1.136167e-04
151 CC 1.145463e-04
152 BP 1.145463e-04
153 BP 1.226370e-04
154 BP 1.527502e-04
155 BP 1.555586e-04
156 BP 1.641566e-04
157 CC 1.674557e-04
158 BP 1.904549e-04
159 BP 1.963991e-04
160 CC 2.185137e-04
161 BP 2.227218e-04
162 BP 2.299050e-04
163 BP 2.324331e-04
164 BP 2.441595e-04
165 BP 3.078547e-04
166 BP 3.564973e-04
167 BP 3.756874e-04
168 BP 4.431107e-04
169 BP 5.680914e-04
170 BP 6.581441e-04
171 BP 6.608815e-04
172 BP 6.878863e-04
173 BP 7.772755e-04
174 BP 8.051557e-04
175 BP 8.717696e-04
176 BP 8.952837e-04
177 BP 1.017919e-03
178 BP 1.017919e-03
179 BP 1.017919e-03
180 BP 1.100736e-03
181 BP 1.119845e-03
182 CC 1.185358e-03
183 BP 1.263880e-03
184 BP 1.286605e-03
185 BP 1.406470e-03
186 BP 1.483902e-03
187 BP 1.498324e-03
188 BP 1.599678e-03
189 BP 1.647397e-03
190 MF 1.664210e-03
191 BP 1.757499e-03
192 BP 1.763535e-03
193 CC 1.829300e-03
194 CC 1.872323e-03
195 CC 1.872323e-03
196 BP 1.872323e-03
197 BP 2.044232e-03
198 BP 2.058093e-03
199 BP 2.070418e-03
200 BP 2.114446e-03
201 BP 2.276391e-03
202 BP 2.378960e-03
203 MF 2.378960e-03
204 BP 2.398190e-03
205 BP 2.555095e-03
206 BP 2.560081e-03
207 BP 2.561484e-03
208 BP 2.655348e-03
209 BP 2.906636e-03
210 BP 2.906636e-03
211 CC 2.969373e-03
212 BP 2.975381e-03
213 BP 3.118986e-03
214 BP 3.118986e-03
215 BP 3.119215e-03
216 BP 3.307455e-03
217 BP 3.336136e-03
218 BP 3.414743e-03
219 BP 3.414743e-03
220 BP 3.427047e-03
221 BP 3.427047e-03
222 BP 3.427047e-03
223 BP 3.514496e-03
224 BP 3.661913e-03
225 BP 3.765553e-03
226 BP 3.829131e-03
227 BP 3.916672e-03
228 BP 3.916672e-03
229 BP 3.979577e-03
230 BP 3.979577e-03
231 BP 3.979577e-03
232 BP 4.419375e-03
233 BP 4.512523e-03
234 MF 4.566676e-03
235 BP 4.567990e-03
236 BP 4.633261e-03
237 BP 4.730245e-03
238 BP 4.969290e-03
239 BP 5.211707e-03
240 CC 5.373079e-03
241 BP 5.506336e-03
242 BP 5.558163e-03
243 BP 5.716028e-03
244 BP 5.716028e-03
245 BP 5.716028e-03
246 BP 5.863553e-03
247 BP 5.917094e-03
248 CC 6.174061e-03
249 CC 6.174061e-03
250 BP 6.178548e-03
251 CC 6.182433e-03
252 CC 6.263812e-03
253 CC 6.277329e-03
254 BP 6.277329e-03
255 BP 6.753380e-03
256 BP 6.809688e-03
257 BP 6.836829e-03
258 BP 7.189931e-03
259 BP 7.279745e-03
260 BP 7.300758e-03
261 BP 7.329654e-03
262 BP 7.345195e-03
263 BP 7.345195e-03
264 BP 7.345195e-03
265 BP 7.345195e-03
266 BP 8.018016e-03
267 BP 8.020236e-03
268 BP 8.021773e-03
269 BP 8.075726e-03
270 BP 8.075726e-03
271 BP 8.092971e-03
272 BP 8.092971e-03
273 BP 8.092971e-03
274 BP 8.373187e-03
275 BP 8.644212e-03
276 BP 8.768660e-03
277 BP 8.841334e-03
278 BP 9.153914e-03
279 BP 9.153914e-03
280 BP 9.153914e-03
281 BP 9.153914e-03
282 BP 9.322786e-03
283 MF 9.377202e-03
284 MF 9.439198e-03
285 CC 9.695182e-03
286 BP 9.822504e-03
287 BP 1.014177e-02
288 BP 1.035507e-02
289 BP 1.035507e-02
290 BP 1.035507e-02
291 BP 1.059472e-02
292 CC 1.059472e-02
293 BP 1.063847e-02
294 BP 1.077810e-02
295 BP 1.077810e-02
296 BP 1.131778e-02
297 BP 1.134789e-02
298 MF 1.155853e-02
299 BP 1.155853e-02
300 BP 1.156353e-02
301 BP 1.195578e-02
302 BP 1.207859e-02
303 BP 1.207859e-02
304 BP 1.236604e-02
305 BP 1.237084e-02
306 BP 1.242609e-02
307 BP 1.242609e-02
308 BP 1.258771e-02
309 MF 1.283634e-02
310 BP 1.298398e-02
311 BP 1.298398e-02
312 BP 1.302006e-02
313 MF 1.302006e-02
314 BP 1.302006e-02
315 BP 1.316943e-02
316 BP 1.316943e-02
317 BP 1.316943e-02
318 BP 1.317019e-02
319 BP 1.317019e-02
320 BP 1.326387e-02
321 BP 1.334016e-02
322 BP 1.334016e-02
323 BP 1.349540e-02
324 BP 1.359143e-02
325 MF 1.360364e-02
326 CC 1.413661e-02
327 BP 1.436044e-02
328 MF 1.436044e-02
329 MF 1.456741e-02
330 BP 1.481407e-02
331 BP 1.481407e-02
332 BP 1.504552e-02
333 BP 1.504658e-02
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336 BP 1.604318e-02
337 BP 1.629083e-02
338 BP 1.630217e-02
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340 MF 1.674363e-02
341 BP 1.696430e-02
342 MF 1.758405e-02
343 BP 1.763656e-02
344 BP 1.763656e-02
345 BP 1.810008e-02
346 BP 1.810008e-02
347 BP 1.846139e-02
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350 BP 1.866211e-02
351 BP 1.866211e-02
352 BP 1.866211e-02
353 BP 1.880996e-02
354 BP 1.880996e-02
355 BP 1.880996e-02
356 BP 1.883025e-02
357 BP 1.883025e-02
358 BP 1.890429e-02
359 BP 1.890429e-02
360 BP 1.917241e-02
361 BP 1.917241e-02
362 MF 1.961157e-02
363 BP 1.961157e-02
364 BP 2.074385e-02
365 BP 2.155954e-02
366 BP 2.188508e-02
367 BP 2.188508e-02
368 BP 2.188508e-02
369 MF 2.188508e-02
370 BP 2.188508e-02
371 BP 2.188508e-02
372 BP 2.188508e-02
373 BP 2.312206e-02
374 CC 2.322244e-02
375 BP 2.401683e-02
376 MF 2.418282e-02
377 CC 2.558199e-02
378 BP 2.663707e-02
379 BP 2.667476e-02
380 BP 2.729724e-02
381 BP 2.749149e-02
382 BP 2.749149e-02
383 BP 2.773820e-02
384 CC 2.791797e-02
385 BP 2.804323e-02
386 BP 2.828763e-02
387 BP 2.899501e-02
388 BP 2.936255e-02
389 BP 2.948014e-02
390 BP 2.955043e-02
391 BP 2.956455e-02
392 BP 2.998832e-02
393 BP 3.043843e-02
394 BP 3.044088e-02
395 BP 3.044088e-02
396 BP 3.063264e-02
397 BP 3.094140e-02
398 BP 3.113676e-02
399 BP 3.115863e-02
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402 BP 3.155071e-02
403 BP 3.155071e-02
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405 BP 3.200371e-02
406 BP 3.217411e-02
407 MF 3.259459e-02
408 BP 3.312068e-02
409 BP 3.339532e-02
410 BP 3.339532e-02
411 BP 3.363372e-02
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414 BP 3.376472e-02
415 BP 3.376472e-02
416 BP 3.376472e-02
417 BP 3.457841e-02
418 BP 3.457841e-02
419 BP 3.469540e-02
420 BP 3.491154e-02
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423 BP 3.516929e-02
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425 CC 3.647941e-02
426 BP 3.647941e-02
427 BP 3.647941e-02
428 BP 3.647941e-02
429 BP 3.726755e-02
430 BP 3.780296e-02
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438 BP 4.107723e-02
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441 BP 4.441887e-02
442 BP 4.478013e-02
443 BP 4.478013e-02
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445 BP 4.590343e-02
446 BP 4.590343e-02
447 CC 4.694400e-02
448 BP 4.748298e-02
449 BP 4.748298e-02
450 BP 4.748298e-02
451 BP 4.772937e-02
452 BP 4.923317e-02
453 BP 4.923317e-02
454 BP 4.923518e-02
455 BP 4.950685e-02vissers
vissers_ontology3 <- testGeneOntology2(vissers_genes3, genes, gatc_regions)Bias will be n_regions that are contained within the gene lengthWarning in pcls(G): initial point very close to some inequality constraintsFetching GO annotations...For 4456 genes, we could not find any categories. These genes will be excluded.To force their use, please run with use_genes_without_cat=TRUE (see documentation).This was the default behavior for version 1.15.1 and earlier.Calculating the p-values...'select()' returned 1:1 mapping between keys and columns
plotGeneOntology2(vissers_ontology3$signif_results)
vissers_ontology3$signif_results category over_represented_pvalue under_represented_pvalue numDEInCat
1 GO:0005622 8.868162e-54 1.0000000 2665
2 GO:0043231 1.064402e-47 1.0000000 1963
3 GO:0043229 6.390191e-44 1.0000000 2194
4 GO:0043227 7.808384e-44 1.0000000 2012
5 GO:0043226 1.702196e-41 1.0000000 2223
6 GO:0009987 3.681274e-40 1.0000000 3070
7 GO:0005634 4.365536e-37 1.0000000 1245
8 GO:0050789 5.201948e-35 1.0000000 1690
9 GO:0006725 5.266683e-35 1.0000000 1142
10 GO:0090304 2.090128e-34 1.0000000 985
11 GO:0050794 2.254243e-34 1.0000000 1582
12 GO:0016070 1.517328e-33 1.0000000 891
13 GO:0006139 2.111557e-33 1.0000000 1086
14 GO:0065007 1.160044e-32 1.0000000 1766
15 GO:0044237 6.577683e-32 1.0000000 1960
16 GO:0046483 1.909831e-31 1.0000000 1114
17 GO:1901360 1.277602e-30 1.0000000 1154
18 GO:0034641 2.375373e-29 1.0000000 1297
19 GO:0010467 3.086790e-28 1.0000000 1245
20 GO:0009058 4.127995e-28 1.0000000 1508
21 GO:1901576 7.686237e-28 1.0000000 1500
22 GO:0019222 1.017068e-26 1.0000000 945
23 GO:0009059 1.082375e-26 1.0000000 1323
24 GO:0044249 1.293790e-26 1.0000000 1478
25 GO:0031323 5.390587e-26 1.0000000 889
26 GO:0048699 3.934512e-25 1.0000000 470
27 GO:0060255 3.479270e-24 1.0000000 871
28 GO:0080090 3.739781e-24 1.0000000 761
29 GO:0048869 3.838653e-24 1.0000000 785
30 GO:0030154 4.987406e-24 1.0000000 784
31 GO:0048513 1.119707e-23 1.0000000 594
32 GO:0030182 1.639045e-23 1.0000000 436
33 GO:0051171 1.022457e-22 1.0000000 745
34 GO:0022008 1.150772e-22 1.0000000 490
35 GO:0010556 1.232977e-22 1.0000000 767
36 GO:0071840 1.542280e-22 1.0000000 1270
37 GO:0032991 1.543524e-22 1.0000000 1185
38 GO:0048731 2.314092e-22 1.0000000 712
39 GO:0010468 4.629413e-22 1.0000000 759
40 GO:0009889 5.889631e-22 1.0000000 776
41 GO:0031326 9.791726e-22 1.0000000 771
42 GO:0051252 3.838822e-21 1.0000000 580
43 GO:0048523 5.577595e-21 1.0000000 675
44 GO:0006366 5.825714e-21 1.0000000 453
45 GO:0048468 1.466394e-20 1.0000000 662
46 GO:0007399 1.669507e-20 1.0000000 573
47 GO:0048519 1.834331e-20 1.0000000 712
48 GO:0005737 2.035383e-20 1.0000000 1774
49 GO:0016043 2.256788e-20 1.0000000 1201
50 GO:0048518 2.261859e-20 1.0000000 772
51 GO:0008152 3.581672e-20 1.0000000 2233
52 GO:0006351 4.927486e-20 1.0000000 543
53 GO:0019219 5.558354e-20 1.0000000 597
54 GO:0009887 8.938432e-20 1.0000000 402
55 GO:0032774 9.009378e-20 1.0000000 543
56 GO:0009653 1.579485e-19 1.0000000 713
57 GO:0032502 2.932953e-19 1.0000000 1198
58 GO:0034654 2.971879e-19 1.0000000 609
59 GO:0006807 3.188907e-19 1.0000000 1874
60 GO:0018130 3.686638e-19 1.0000000 634
61 GO:0019438 4.162263e-19 1.0000000 631
62 GO:0003676 6.298348e-19 1.0000000 849
63 GO:0048522 6.525406e-19 1.0000000 703
64 GO:0006357 9.974277e-19 1.0000000 415
65 GO:0071704 1.181540e-18 1.0000000 2122
66 GO:0007423 1.206741e-18 1.0000000 276
67 GO:0048856 1.828163e-18 1.0000000 1127
68 GO:1901362 4.542553e-18 1.0000000 643
69 GO:0006355 4.550300e-18 1.0000000 495
70 GO:2001141 4.550300e-18 1.0000000 495
71 GO:0043170 4.909195e-18 1.0000000 1769
72 GO:0005488 9.114590e-18 1.0000000 2122
73 GO:0005515 1.592602e-17 1.0000000 1000
74 GO:0044238 1.792960e-17 1.0000000 1976
75 GO:0007275 1.843871e-17 1.0000000 961
76 GO:0044271 5.552620e-17 1.0000000 876
77 GO:0140110 2.232039e-16 1.0000000 352
78 GO:0048666 2.988139e-16 1.0000000 336
79 GO:0001654 3.850762e-16 1.0000000 230
80 GO:0048880 3.850762e-16 1.0000000 230
81 GO:0150063 3.850762e-16 1.0000000 230
82 GO:0048583 1.451124e-15 1.0000000 473
83 GO:0048749 1.761106e-15 1.0000000 219
84 GO:0007166 2.111315e-15 1.0000000 352
85 GO:0009966 2.410945e-15 1.0000000 392
86 GO:0044085 4.995287e-15 1.0000000 638
87 GO:0050793 6.119068e-15 1.0000000 352
88 GO:0007552 1.508876e-14 1.0000000 256
89 GO:0045165 2.487088e-14 1.0000000 189
90 GO:0007444 5.322792e-14 1.0000000 305
91 GO:0009886 7.023934e-14 1.0000000 250
92 GO:0043565 8.935143e-14 1.0000000 304
93 GO:0048592 9.438957e-14 1.0000000 190
94 GO:0090596 9.438957e-14 1.0000000 190
95 GO:0048707 1.087218e-13 1.0000000 243
96 GO:0046530 1.154957e-13 1.0000000 143
97 GO:0022607 1.233844e-13 1.0000000 560
98 GO:0010646 1.416778e-13 1.0000000 442
99 GO:0001745 2.351367e-13 1.0000000 184
100 GO:0023051 2.429866e-13 1.0000000 439
101 GO:0031175 2.881077e-13 1.0000000 261
102 GO:0051128 4.931432e-13 1.0000000 345
103 GO:0110165 5.372865e-13 1.0000000 3263
104 GO:0006996 6.186520e-13 1.0000000 684
105 GO:0048477 6.211358e-13 1.0000000 277
106 GO:0009791 8.080120e-13 1.0000000 326
107 GO:0000902 1.050562e-12 1.0000000 290
108 GO:0097159 1.120482e-12 1.0000000 1175
109 GO:0006396 1.526204e-12 1.0000000 313
110 GO:0022412 1.749518e-12 1.0000000 393
111 GO:0003006 1.762053e-12 1.0000000 419
112 GO:0032989 3.104851e-12 1.0000000 295
113 GO:1990837 3.249947e-12 1.0000000 271
114 GO:0007560 3.554364e-12 1.0000000 223
115 GO:0048812 3.832441e-12 1.0000000 237
116 GO:0003700 4.024905e-12 1.0000000 267
117 GO:0007292 4.301353e-12 1.0000000 294
118 GO:0002165 5.805748e-12 1.0000000 283
119 GO:0048858 7.548311e-12 1.0000000 238
120 GO:0120039 7.822857e-12 1.0000000 237
121 GO:0009968 9.590621e-12 1.0000000 205
122 GO:0003690 1.563028e-11 1.0000000 279
123 GO:0048667 1.670472e-11 1.0000000 233
124 GO:0003677 2.208850e-11 1.0000000 431
125 GO:0009790 2.604819e-11 1.0000000 269
126 GO:0048737 2.635286e-11 1.0000000 190
127 GO:0001754 2.724474e-11 1.0000000 126
128 GO:0045595 2.761006e-11 1.0000000 159
129 GO:0048736 3.589432e-11 1.0000000 191
130 GO:0000976 3.700019e-11 1.0000000 257
131 GO:0009890 3.743945e-11 1.0000000 348
132 GO:0051716 3.883134e-11 1.0000000 806
133 GO:0001751 4.002854e-11 1.0000000 123
134 GO:0000977 4.123619e-11 1.0000000 234
135 GO:0035107 4.187964e-11 1.0000000 187
136 GO:0035114 4.517113e-11 1.0000000 186
137 GO:0001067 4.606466e-11 1.0000000 257
138 GO:0007389 4.712170e-11 1.0000000 260
139 GO:0035120 4.744006e-11 1.0000000 182
140 GO:0048585 5.179144e-11 1.0000000 223
141 GO:0009892 5.566394e-11 1.0000000 395
142 GO:0023052 6.422382e-11 1.0000000 740
143 GO:0031327 6.709373e-11 1.0000000 345
144 GO:0010558 7.011351e-11 1.0000000 342
145 GO:1990904 8.211038e-11 1.0000000 270
146 GO:0007154 8.389847e-11 1.0000000 760
147 GO:0031324 1.005315e-10 1.0000000 378
148 GO:0007049 1.046144e-10 1.0000000 321
149 GO:0010648 1.465374e-10 1.0000000 212
150 GO:0007281 1.717192e-10 1.0000000 317
151 GO:0040007 1.965167e-10 1.0000000 229
152 GO:0031981 2.080930e-10 1.0000000 341
153 GO:0003723 2.248425e-10 1.0000000 395
154 GO:0030674 2.720256e-10 1.0000000 159
155 GO:0023057 2.934169e-10 1.0000000 210
156 GO:0003002 4.013067e-10 1.0000000 244
157 GO:0007409 4.070183e-10 1.0000000 180
158 GO:0022402 5.169131e-10 1.0000000 267
159 GO:0010605 5.249485e-10 1.0000000 370
160 GO:0000278 5.348650e-10 1.0000000 217
161 GO:0051960 5.855799e-10 1.0000000 124
162 GO:0000981 8.611027e-10 1.0000000 229
163 GO:0070013 8.778160e-10 1.0000000 402
164 GO:0051301 8.913904e-10 1.0000000 137
165 GO:0007476 9.592593e-10 1.0000000 157
166 GO:0031974 1.008823e-09 1.0000000 402
167 GO:0043233 1.008823e-09 1.0000000 402
168 GO:0007165 1.016708e-09 1.0000000 636
169 GO:0070161 1.090032e-09 1.0000000 98
170 GO:0061564 1.095104e-09 1.0000000 187
171 GO:0051253 1.119477e-09 1.0000000 168
172 GO:0051641 1.215282e-09 1.0000000 475
173 GO:0007411 1.292260e-09 1.0000000 149
174 GO:0022414 1.381575e-09 1.0000000 523
175 GO:0007472 1.560297e-09 1.0000000 162
176 GO:0009893 1.940675e-09 1.0000000 382
177 GO:0097485 1.982477e-09 1.0000000 152
178 GO:0048589 2.100781e-09 1.0000000 197
179 GO:0007276 2.861588e-09 1.0000000 394
180 GO:0040008 3.346377e-09 1.0000000 168
181 GO:0031325 3.518290e-09 1.0000000 347
182 GO:0043228 3.665982e-09 1.0000000 710
183 GO:0043232 3.665982e-09 1.0000000 710
184 GO:0035220 3.735986e-09 1.0000000 204
185 GO:0016477 3.787571e-09 1.0000000 170
186 GO:0012505 3.977495e-09 1.0000000 480
187 GO:0019827 6.501045e-09 1.0000000 68
188 GO:0098727 6.501045e-09 1.0000000 68
189 GO:0010604 6.622076e-09 1.0000000 346
190 GO:0051172 6.867044e-09 1.0000000 231
191 GO:0060284 8.929660e-09 1.0000000 101
192 GO:2000026 1.068210e-08 1.0000000 149
193 GO:0032501 1.174681e-08 1.0000000 1327
194 GO:0048663 1.190815e-08 1.0000000 71
195 GO:0000987 1.234107e-08 1.0000000 188
196 GO:0048609 1.503054e-08 1.0000000 397
197 GO:0048729 1.556162e-08 1.0000000 184
198 GO:0016192 1.763265e-08 1.0000000 246
199 GO:0045892 1.837432e-08 1.0000000 155
200 GO:1902679 1.837432e-08 1.0000000 155
201 GO:0050896 2.641408e-08 1.0000000 1072
202 GO:0030030 2.966791e-08 1.0000000 336
203 GO:0019899 2.971264e-08 1.0000000 203
204 GO:0009888 3.111783e-08 1.0000000 314
205 GO:0000978 3.296152e-08 1.0000000 183
206 GO:0120036 3.302025e-08 1.0000000 330
207 GO:0005829 3.550255e-08 1.0000000 475
208 GO:0007417 4.126580e-08 1.0000000 149
209 GO:0045934 4.514300e-08 1.0000000 170
210 GO:0051649 4.885949e-08 1.0000000 315
211 GO:0060429 5.186755e-08 1.0000000 273
212 GO:0000280 6.153476e-08 1.0000000 133
213 GO:0010647 6.411338e-08 1.0000000 221
214 GO:0051094 6.441813e-08 1.0000000 128
215 GO:0007167 7.066024e-08 1.0000000 157
216 GO:0023056 7.397248e-08 1.0000000 220
217 GO:0002009 8.361023e-08 1.0000000 170
218 GO:0030054 8.729724e-08 1.0000000 231
219 GO:0005654 9.756173e-08 1.0000000 197
220 GO:0051239 1.113082e-07 1.0000000 280
221 GO:0046552 1.126756e-07 1.0000000 61
222 GO:1903047 1.130847e-07 1.0000000 152
223 GO:0048285 1.167333e-07 1.0000000 140
224 GO:0045664 1.196457e-07 1.0000000 56
225 GO:0022613 1.224281e-07 1.0000000 140
226 GO:1902494 1.244224e-07 1.0000000 441
227 GO:0001752 1.300890e-07 1.0000000 57
228 GO:0042706 1.300890e-07 1.0000000 57
229 GO:0048638 1.312654e-07 1.0000000 131
230 GO:0051173 1.317473e-07 1.0000000 310
231 GO:0046907 1.375819e-07 1.0000000 249
232 GO:0140513 1.406174e-07 1.0000000 334
233 GO:0070727 1.408867e-07 1.0000000 317
234 GO:0005938 1.447576e-07 0.9999999 108
235 GO:0032504 1.538156e-07 1.0000000 463
236 GO:0009967 1.635493e-07 1.0000000 204
237 GO:0010557 2.031285e-07 1.0000000 260
238 GO:0007219 2.034865e-07 0.9999999 56
239 GO:0034660 2.210766e-07 1.0000000 168
240 GO:0009891 2.465103e-07 1.0000000 267
241 GO:0007010 2.499129e-07 1.0000000 292
242 GO:0051254 2.530907e-07 1.0000000 227
243 GO:0009792 2.631782e-07 0.9999999 99
244 GO:0031328 2.743956e-07 1.0000000 266
245 GO:0016071 2.834357e-07 1.0000000 195
246 GO:0061351 3.167447e-07 0.9999999 62
247 GO:0034329 3.189534e-07 1.0000000 125
248 GO:0051093 3.234891e-07 1.0000000 116
249 GO:0050767 3.459989e-07 0.9999999 77
250 GO:0001700 3.656681e-07 0.9999998 95
251 GO:0140694 4.496019e-07 1.0000000 112
252 GO:0005575 4.958058e-07 1.0000000 3724
253 GO:0048584 5.603221e-07 1.0000000 258
254 GO:0016331 5.649495e-07 0.9999998 73
255 GO:0001708 5.999732e-07 0.9999998 66
256 GO:0007059 6.376120e-07 1.0000000 103
257 GO:0048598 6.404210e-07 1.0000000 125
258 GO:0009894 6.724685e-07 1.0000000 145
259 GO:0005730 7.181970e-07 1.0000000 131
260 GO:0042461 7.958552e-07 0.9999997 71
261 GO:0030718 8.600065e-07 0.9999997 52
262 GO:0045944 9.373811e-07 1.0000000 159
263 GO:0044087 9.473226e-07 1.0000000 149
264 GO:0045597 9.825811e-07 0.9999996 69
265 GO:0005911 1.011065e-06 0.9999996 74
266 GO:0035556 1.018765e-06 0.9999996 288
267 GO:0048646 1.062535e-06 0.9999996 247
268 GO:0035282 1.108392e-06 1.0000000 120
269 GO:0042592 1.121911e-06 0.9999996 209
270 GO:0007405 1.172536e-06 0.9999996 57
271 GO:0060090 1.216585e-06 0.9999995 238
272 GO:0007169 1.236014e-06 1.0000000 118
273 GO:0009952 1.290683e-06 0.9999994 102
274 GO:0005819 1.364847e-06 0.9999995 63
275 GO:0045466 1.378924e-06 0.9999996 45
276 GO:2000177 1.389982e-06 0.9999996 41
277 GO:0008593 1.537731e-06 0.9999995 48
278 GO:0034470 1.958886e-06 0.9999993 131
279 GO:0060828 2.019894e-06 0.9999993 57
280 GO:0008283 2.933182e-06 0.9999989 151
281 GO:0007051 2.953364e-06 0.9999987 70
282 GO:0060070 3.192077e-06 0.9999987 65
283 GO:0033036 3.280345e-06 0.9999980 385
284 GO:1902531 3.572032e-06 0.9999982 173
285 GO:0045935 3.668665e-06 0.9999979 234
286 GO:0098796 3.740558e-06 0.9999980 222
287 GO:0031090 4.125313e-06 0.9999973 316
288 GO:0010975 4.156033e-06 0.9999982 72
289 GO:0140014 4.702567e-06 0.9999979 72
290 GO:0048732 4.759339e-06 0.9999977 92
291 GO:0046532 5.249797e-06 0.9999988 33
292 GO:0007391 5.688383e-06 0.9999978 62
293 GO:0008104 5.876257e-06 0.9999962 291
294 GO:0007163 6.321334e-06 0.9999968 104
295 GO:0007422 6.780099e-06 0.9999981 38
296 GO:0031344 6.810750e-06 0.9999967 92
297 GO:0016358 6.818470e-06 0.9999966 95
298 GO:0034330 7.104744e-06 0.9999960 184
299 GO:0051640 7.216586e-06 0.9999964 111
300 GO:0007265 7.235586e-06 0.9999982 32
301 GO:0048870 7.285025e-06 0.9999959 184
302 GO:0098609 7.526727e-06 0.9999965 85
303 GO:0008380 8.433650e-06 0.9999955 134
304 GO:0120035 9.850916e-06 0.9999952 90
305 GO:0030424 1.038664e-05 0.9999946 126
306 GO:0051240 1.060640e-05 0.9999947 106
307 GO:0042254 1.199261e-05 0.9999940 96
308 GO:0016050 1.241095e-05 0.9999944 66
309 GO:0051246 1.316277e-05 0.9999922 169
310 GO:0007480 1.323869e-05 0.9999956 46
311 GO:0050839 1.464028e-05 0.9999952 47
312 GO:0198738 1.495557e-05 0.9999931 73
313 GO:0042462 1.518785e-05 0.9999938 60
314 GO:0045893 1.668511e-05 0.9999896 192
315 GO:1902680 1.668511e-05 0.9999896 192
316 GO:0006468 1.716469e-05 0.9999910 121
317 GO:0065008 1.783055e-05 0.9999872 382
318 GO:0030111 1.785685e-05 0.9999924 60
319 GO:0008356 1.805504e-05 0.9999925 58
320 GO:0000122 1.831119e-05 0.9999907 107
321 GO:0003712 1.990208e-05 0.9999898 86
322 GO:1902692 2.013493e-05 0.9999943 34
323 GO:0031329 2.035672e-05 0.9999893 103
324 GO:0042051 2.082102e-05 0.9999915 58
325 GO:0061640 2.132669e-05 0.9999914 51
326 GO:0000910 2.217421e-05 0.9999907 55
327 GO:0010720 2.297613e-05 0.9999912 49
328 GO:0010256 2.357224e-05 0.9999874 98
329 GO:0033554 2.389434e-05 0.9999840 228
330 GO:0010629 2.545636e-05 0.9999831 213
331 GO:0001709 2.588445e-05 0.9999881 70
332 GO:0051321 2.670120e-05 0.9999856 100
333 GO:0051130 2.670600e-05 0.9999846 132
334 GO:0007173 2.728249e-05 0.9999900 47
335 GO:0038127 2.728249e-05 0.9999900 47
336 GO:0048608 2.731278e-05 0.9999898 50
337 GO:0061458 2.731278e-05 0.9999898 50
338 GO:0003714 2.863530e-05 0.9999914 33
339 GO:0051726 2.874134e-05 0.9999834 128
340 GO:0010608 3.134943e-05 0.9999809 143
341 GO:0051961 3.171151e-05 0.9999874 53
342 GO:0099080 3.181377e-05 0.9999804 159
343 GO:0040011 3.203537e-05 0.9999825 120
344 GO:0022618 3.246379e-05 0.9999843 66
345 GO:0050769 3.317793e-05 0.9999885 41
346 GO:0042127 3.318022e-05 0.9999822 110
347 GO:0035218 3.473277e-05 0.9999857 58
348 GO:0000375 3.700705e-05 0.9999782 123
349 GO:0000377 3.700705e-05 0.9999782 123
350 GO:0000398 3.700705e-05 0.9999782 123
351 GO:0007548 3.762642e-05 0.9999841 58
352 GO:0043933 3.857860e-05 0.9999715 354
353 GO:0015031 3.940730e-05 0.9999753 162
354 GO:0007264 3.967467e-05 0.9999795 86
355 GO:0010160 4.190431e-05 0.9999888 31
356 GO:0098813 4.380651e-05 0.9999774 81
357 GO:0048813 4.410376e-05 0.9999775 85
358 GO:0006397 4.463598e-05 0.9999725 143
359 GO:0007478 4.627886e-05 0.9999830 47
360 GO:0009994 4.832097e-05 0.9999751 82
361 GO:0000003 4.841185e-05 0.9999620 559
362 GO:0051962 4.870632e-05 0.9999782 61
363 GO:0071826 4.961697e-05 0.9999755 67
364 GO:0007346 5.038304e-05 0.9999738 81
365 GO:0045926 5.052264e-05 0.9999771 63
366 GO:2000179 5.142743e-05 0.9999907 21
367 GO:1903311 5.183424e-05 0.9999726 86
368 GO:0030055 5.613694e-05 0.9999864 28
369 GO:0030707 5.619346e-05 0.9999673 124
370 GO:0048645 5.621366e-05 0.9999824 36
371 GO:0033043 5.838549e-05 0.9999638 149
372 GO:0016055 5.963195e-05 0.9999714 69
373 GO:0007420 6.272276e-05 0.9999705 67
374 GO:0000118 6.374142e-05 0.9999855 23
375 GO:0007416 6.748532e-05 0.9999637 94
376 GO:0030855 6.901652e-05 0.9999566 162
377 GO:1904892 6.984936e-05 0.9999837 24
378 GO:0048859 7.083217e-05 0.9999775 36
379 GO:0000149 7.196994e-05 0.9999784 29
380 GO:0000226 7.909591e-05 0.9999494 159
381 GO:0051783 8.061194e-05 0.9999744 31
382 GO:0030097 8.159220e-05 0.9999659 50
383 GO:0098798 8.196429e-05 0.9999518 103
384 GO:0001228 8.400784e-05 0.9999637 54
385 GO:0002064 8.765159e-05 0.9999465 138
386 GO:0150034 8.783527e-05 0.9999599 62
387 GO:0035295 8.820162e-05 0.9999482 122
388 GO:0000922 9.966506e-05 0.9999748 24
389 GO:0016319 1.010450e-04 0.9999596 47
390 GO:0002052 1.048531e-04 0.9999802 20
391 GO:1901888 1.072042e-04 0.9999474 69
392 GO:0051179 1.080521e-04 0.9999112 808
393 GO:0051225 1.104904e-04 0.9999584 38
394 GO:0035186 1.117756e-04 0.9999815 17
395 GO:0014016 1.125749e-04 0.9999671 31
396 GO:0071695 1.129364e-04 0.9999377 91
397 GO:0046425 1.136307e-04 0.9999729 23
398 GO:0048640 1.138461e-04 0.9999502 54
399 GO:0008286 1.168800e-04 0.9999523 45
400 GO:0016072 1.232372e-04 0.9999342 74
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500 143
501 327
502 98
503 435
504 313
505 26
506 20
507 20
508 41
509 340
510 45
511 15
512 22
513 22
514 88
515 99
516 171
517 370
518 94
519 27
520 27
521 22
522 38
523 36
524 116
525 43
526 43
527 125
528 365
529 46
530 112
531 112
532 1291
533 128
534 48
535 457
536 168
537 121
538 67
539 54
540 54
541 155
542 51
543 134
544 12
545 63
546 76
547 118
548 50
549 53
550 12
551 79
552 653
553 223
554 34
555 624
556 33
557 201
558 156
559 87
560 530
561 7
562 131
563 77
564 316
565 13
566 172
567 169
568 124
569 488
570 179
571 25
572 12
573 150
574 21
575 36
576 38
577 115
578 78
579 79
580 124
581 44
582 82
583 47
584 126
585 125
586 196
587 35
588 71
589 63
590 374
591 8
592 121
593 52
594 12
595 486
596 16
597 14
598 12179
599 20
600 234
601 148
602 85
603 78
604 187
605 141
606 88
607 151
608 19
609 54
610 113
611 68
612 746
613 114
614 58
615 31
616 216
617 12
618 69
619 69
620 69
621 53
622 32
623 141
624 42
625 54
626 10
627 30
628 95
629 95
630 25
631 32
632 69
633 79
634 55
635 35
636 93
637 260
638 26
639 60
640 527
641 173
642 29
643 24
644 251
645 66
646 48
647 25
648 45
649 54
650 54
651 12
652 33
653 13
654 231
655 116
656 73
657 61
658 94
659 29
660 73
661 117
662 85
663 291
664 22
665 45
666 548
667 31
668 51
669 41
670 153
671 89
672 9
673 97
674 34
675 35
676 102
677 102
678 131
679 10
680 596
681 328
682 107
683 151
684 75
term
1 intracellular anatomical structure
2 intracellular membrane-bounded organelle
3 intracellular organelle
4 membrane-bounded organelle
5 organelle
6 cellular process
7 nucleus
8 regulation of biological process
9 cellular aromatic compound metabolic process
10 nucleic acid metabolic process
11 regulation of cellular process
12 RNA metabolic process
13 nucleobase-containing compound metabolic process
14 biological regulation
15 cellular metabolic process
16 heterocycle metabolic process
17 organic cyclic compound metabolic process
18 cellular nitrogen compound metabolic process
19 gene expression
20 biosynthetic process
21 organic substance biosynthetic process
22 regulation of metabolic process
23 macromolecule biosynthetic process
24 cellular biosynthetic process
25 regulation of cellular metabolic process
26 generation of neurons
27 regulation of macromolecule metabolic process
28 regulation of primary metabolic process
29 cellular developmental process
30 cell differentiation
31 animal organ development
32 neuron differentiation
33 regulation of nitrogen compound metabolic process
34 neurogenesis
35 regulation of macromolecule biosynthetic process
36 cellular component organization or biogenesis
37 protein-containing complex
38 system development
39 regulation of gene expression
40 regulation of biosynthetic process
41 regulation of cellular biosynthetic process
42 regulation of RNA metabolic process
43 negative regulation of cellular process
44 transcription by RNA polymerase II
45 cell development
46 nervous system development
47 negative regulation of biological process
48 cytoplasm
49 cellular component organization
50 positive regulation of biological process
51 metabolic process
52 DNA-templated transcription
53 regulation of nucleobase-containing compound metabolic process
54 animal organ morphogenesis
55 RNA biosynthetic process
56 anatomical structure morphogenesis
57 developmental process
58 nucleobase-containing compound biosynthetic process
59 nitrogen compound metabolic process
60 heterocycle biosynthetic process
61 aromatic compound biosynthetic process
62 nucleic acid binding
63 positive regulation of cellular process
64 regulation of transcription by RNA polymerase II
65 organic substance metabolic process
66 sensory organ development
67 anatomical structure development
68 organic cyclic compound biosynthetic process
69 regulation of DNA-templated transcription
70 regulation of RNA biosynthetic process
71 macromolecule metabolic process
72 binding
73 protein binding
74 primary metabolic process
75 multicellular organism development
76 cellular nitrogen compound biosynthetic process
77 transcription regulator activity
78 neuron development
79 eye development
80 sensory system development
81 visual system development
82 regulation of response to stimulus
83 compound eye development
84 cell surface receptor signaling pathway
85 regulation of signal transduction
86 cellular component biogenesis
87 regulation of developmental process
88 metamorphosis
89 cell fate commitment
90 imaginal disc development
91 post-embryonic animal morphogenesis
92 sequence-specific DNA binding
93 eye morphogenesis
94 sensory organ morphogenesis
95 instar larval or pupal morphogenesis
96 photoreceptor cell differentiation
97 cellular component assembly
98 regulation of cell communication
99 compound eye morphogenesis
100 regulation of signaling
101 neuron projection development
102 regulation of cellular component organization
103 cellular anatomical entity
104 organelle organization
105 oogenesis
106 post-embryonic development
107 cell morphogenesis
108 organic cyclic compound binding
109 RNA processing
110 cellular process involved in reproduction in multicellular organism
111 developmental process involved in reproduction
112 cellular anatomical entity morphogenesis
113 sequence-specific double-stranded DNA binding
114 imaginal disc morphogenesis
115 neuron projection morphogenesis
116 DNA-binding transcription factor activity
117 female gamete generation
118 instar larval or pupal development
119 cell projection morphogenesis
120 plasma membrane bounded cell projection morphogenesis
121 negative regulation of signal transduction
122 double-stranded DNA binding
123 cell morphogenesis involved in neuron differentiation
124 DNA binding
125 embryo development
126 imaginal disc-derived appendage development
127 eye photoreceptor cell differentiation
128 regulation of cell differentiation
129 appendage development
130 transcription cis-regulatory region binding
131 negative regulation of biosynthetic process
132 cellular response to stimulus
133 compound eye photoreceptor cell differentiation
134 RNA polymerase II transcription regulatory region sequence-specific DNA binding
135 appendage morphogenesis
136 imaginal disc-derived appendage morphogenesis
137 transcription regulatory region nucleic acid binding
138 pattern specification process
139 post-embryonic appendage morphogenesis
140 negative regulation of response to stimulus
141 negative regulation of metabolic process
142 signaling
143 negative regulation of cellular biosynthetic process
144 negative regulation of macromolecule biosynthetic process
145 ribonucleoprotein complex
146 cell communication
147 negative regulation of cellular metabolic process
148 cell cycle
149 negative regulation of cell communication
150 germ cell development
151 growth
152 nuclear lumen
153 RNA binding
154 protein-macromolecule adaptor activity
155 negative regulation of signaling
156 regionalization
157 axonogenesis
158 cell cycle process
159 negative regulation of macromolecule metabolic process
160 mitotic cell cycle
161 regulation of nervous system development
162 DNA-binding transcription factor activity, RNA polymerase II-specific
163 intracellular organelle lumen
164 cell division
165 imaginal disc-derived wing morphogenesis
166 membrane-enclosed lumen
167 organelle lumen
168 signal transduction
169 anchoring junction
170 axon development
171 negative regulation of RNA metabolic process
172 cellular localization
173 axon guidance
174 reproductive process
175 wing disc morphogenesis
176 positive regulation of metabolic process
177 neuron projection guidance
178 developmental growth
179 gamete generation
180 regulation of growth
181 positive regulation of cellular metabolic process
182 non-membrane-bounded organelle
183 intracellular non-membrane-bounded organelle
184 wing disc development
185 cell migration
186 endomembrane system
187 stem cell population maintenance
188 maintenance of cell number
189 positive regulation of macromolecule metabolic process
190 negative regulation of nitrogen compound metabolic process
191 regulation of cell development
192 regulation of multicellular organismal development
193 multicellular organismal process
194 neuron fate commitment
195 cis-regulatory region sequence-specific DNA binding
196 multicellular organismal reproductive process
197 tissue morphogenesis
198 vesicle-mediated transport
199 negative regulation of DNA-templated transcription
200 negative regulation of RNA biosynthetic process
201 response to stimulus
202 cell projection organization
203 enzyme binding
204 tissue development
205 RNA polymerase II cis-regulatory region sequence-specific DNA binding
206 plasma membrane bounded cell projection organization
207 cytosol
208 central nervous system development
209 negative regulation of nucleobase-containing compound metabolic process
210 establishment of localization in cell
211 epithelium development
212 nuclear division
213 positive regulation of cell communication
214 positive regulation of developmental process
215 enzyme-linked receptor protein signaling pathway
216 positive regulation of signaling
217 morphogenesis of an epithelium
218 cell junction
219 nucleoplasm
220 regulation of multicellular organismal process
221 photoreceptor cell fate commitment
222 mitotic cell cycle process
223 organelle fission
224 regulation of neuron differentiation
225 ribonucleoprotein complex biogenesis
226 catalytic complex
227 compound eye photoreceptor fate commitment
228 eye photoreceptor cell fate commitment
229 regulation of developmental growth
230 positive regulation of nitrogen compound metabolic process
231 intracellular transport
232 nuclear protein-containing complex
233 cellular macromolecule localization
234 cell cortex
235 multicellular organism reproduction
236 positive regulation of signal transduction
237 positive regulation of macromolecule biosynthetic process
238 Notch signaling pathway
239 ncRNA metabolic process
240 positive regulation of biosynthetic process
241 cytoskeleton organization
242 positive regulation of RNA metabolic process
243 embryo development ending in birth or egg hatching
244 positive regulation of cellular biosynthetic process
245 mRNA metabolic process
246 neural precursor cell proliferation
247 cell junction assembly
248 negative regulation of developmental process
249 regulation of neurogenesis
250 embryonic development via the syncytial blastoderm
251 non-membrane-bounded organelle assembly
252 cellular_component
253 positive regulation of response to stimulus
254 morphogenesis of embryonic epithelium
255 cell fate specification
256 chromosome segregation
257 embryonic morphogenesis
258 regulation of catabolic process
259 nucleolus
260 photoreceptor cell development
261 germ-line stem cell population maintenance
262 positive regulation of transcription by RNA polymerase II
263 regulation of cellular component biogenesis
264 positive regulation of cell differentiation
265 cell-cell junction
266 intracellular signal transduction
267 anatomical structure formation involved in morphogenesis
268 segmentation
269 homeostatic process
270 neuroblast proliferation
271 molecular adaptor activity
272 transmembrane receptor protein tyrosine kinase signaling pathway
273 anterior/posterior pattern specification
274 spindle
275 R7 cell differentiation
276 regulation of neural precursor cell proliferation
277 regulation of Notch signaling pathway
278 ncRNA processing
279 regulation of canonical Wnt signaling pathway
280 cell population proliferation
281 spindle organization
282 canonical Wnt signaling pathway
283 macromolecule localization
284 regulation of intracellular signal transduction
285 positive regulation of nucleobase-containing compound metabolic process
286 membrane protein complex
287 organelle membrane
288 regulation of neuron projection development
289 mitotic nuclear division
290 gland development
291 regulation of photoreceptor cell differentiation
292 dorsal closure
293 protein localization
294 establishment or maintenance of cell polarity
295 peripheral nervous system development
296 regulation of cell projection organization
297 dendrite development
298 cell junction organization
299 organelle localization
300 Ras protein signal transduction
301 cell motility
302 cell-cell adhesion
303 RNA splicing
304 regulation of plasma membrane bounded cell projection organization
305 axon
306 positive regulation of multicellular organismal process
307 ribosome biogenesis
308 vesicle organization
309 regulation of protein metabolic process
310 imaginal disc-derived leg morphogenesis
311 cell adhesion molecule binding
312 cell-cell signaling by wnt
313 eye photoreceptor cell development
314 positive regulation of DNA-templated transcription
315 positive regulation of RNA biosynthetic process
316 protein phosphorylation
317 regulation of biological quality
318 regulation of Wnt signaling pathway
319 asymmetric cell division
320 negative regulation of transcription by RNA polymerase II
321 transcription coregulator activity
322 regulation of neuroblast proliferation
323 regulation of cellular catabolic process
324 compound eye photoreceptor development
325 cytoskeleton-dependent cytokinesis
326 cytokinesis
327 positive regulation of cell development
328 endomembrane system organization
329 cellular response to stress
330 negative regulation of gene expression
331 cell fate determination
332 meiotic cell cycle
333 positive regulation of cellular component organization
334 epidermal growth factor receptor signaling pathway
335 ERBB signaling pathway
336 reproductive structure development
337 reproductive system development
338 transcription corepressor activity
339 regulation of cell cycle
340 post-transcriptional regulation of gene expression
341 negative regulation of nervous system development
342 supramolecular complex
343 locomotion
344 protein-RNA complex assembly
345 positive regulation of neurogenesis
346 regulation of cell population proliferation
347 leg disc development
348 RNA splicing, via transesterification reactions
349 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
350 mRNA splicing, via spliceosome
351 sex differentiation
352 protein-containing complex organization
353 protein transport
354 small GTPase-mediated signal transduction
355 formation of animal organ boundary
356 nuclear chromosome segregation
357 dendrite morphogenesis
358 mRNA processing
359 leg disc morphogenesis
360 oocyte differentiation
361 reproduction
362 positive regulation of nervous system development
363 protein-RNA complex organization
364 regulation of mitotic cell cycle
365 negative regulation of growth
366 positive regulation of neural precursor cell proliferation
367 regulation of mRNA metabolic process
368 cell-substrate junction
369 follicle cell of egg chamber development
370 animal organ formation
371 regulation of organelle organization
372 Wnt signaling pathway
373 brain development
374 histone deacetylase complex
375 synapse assembly
376 epithelial cell differentiation
377 regulation of receptor signaling pathway via STAT
378 formation of anatomical boundary
379 SNARE binding
380 microtubule cytoskeleton organization
381 regulation of nuclear division
382 hemopoiesis
383 mitochondrial protein-containing complex
384 DNA-binding transcription activator activity, RNA polymerase II-specific
385 epithelial cell development
386 distal axon
387 tube development
388 spindle pole
389 mushroom body development
390 positive regulation of neuroblast proliferation
391 regulation of cell junction assembly
392 localization
393 spindle assembly
394 syncytial blastoderm mitotic cell cycle
395 neuroblast differentiation
396 anatomical structure maturation
397 regulation of receptor signaling pathway via JAK-STAT
398 negative regulation of developmental growth
399 insulin receptor signaling pathway
400 rRNA metabolic process
401 DNA-binding transcription activator activity
402 neuron fate specification
403 nitrogen compound transport
404 cytoplasmic vesicle
405 intracellular vesicle
406 intracellular signaling cassette
407 protein export from nucleus
408 establishment or maintenance of microtubule cytoskeleton polarity
409 head development
410 phosphorylation
411 cell maturation
412 regulation of synapse structure or activity
413 negative regulation of cellular component organization
414 transcription repressor complex
415 cell-cell signaling
416 protein-containing complex assembly
417 embryonic pattern specification
418 vesicle
419 protein-containing complex binding
420 R8 cell differentiation
421 cellular homeostasis
422 endocytosis
423 transcription regulator complex
424 apical junction complex
425 meiotic cell cycle process
426 growth cone
427 regulation of programmed cell death
428 R8 cell fate commitment
429 larval development
430 regulation of localization
431 developmental maturation
432 sexual reproduction
433 regulation of mitotic nuclear division
434 negative regulation of Notch signaling pathway
435 homophilic cell adhesion via plasma membrane adhesion molecules
436 negative regulation of cell junction assembly
437 preribosome
438 regulation of cell cycle process
439 programmed cell death
440 muscle structure development
441 establishment or maintenance of cytoskeleton polarity
442 regulation of anatomical structure morphogenesis
443 ameboidal-type cell migration
444 synaptic assembly at neuromuscular junction
445 intracellular protein transport
446 adherens junction organization
447 meiotic nuclear division
448 somatic stem cell population maintenance
449 cell-cell junction organization
450 centrosome cycle
451 membrane organization
452 axis specification
453 kinase binding
454 phosphate-containing compound metabolic process
455 tRNA metabolic process
456 phosphorus metabolic process
457 catabolic process
458 supramolecular fiber organization
459 regulation of transport
460 microtubule-based process
461 regulation of synapse assembly
462 tripartite regional subdivision
463 anterior/posterior axis specification, embryo
464 adherens junction assembly
465 microtubule organizing center organization
466 import into cell
467 regulation of intracellular transport
468 mitotic spindle
469 rRNA processing
470 border follicle cell migration
471 protein kinase binding
472 R3/R4 cell differentiation
473 regulation of cellular response to insulin stimulus
474 organelle subcompartment
475 positive regulation of catabolic process
476 cellular response to peptide hormone stimulus
477 cellular response to peptide
478 cellular response to insulin stimulus
479 anterior/posterior axis specification
480 autophagy
481 process utilizing autophagic mechanism
482 CCU codon-amino acid adaptor activity
483 mitotic sister chromatid segregation
484 regulation of synaptic assembly at neuromuscular junction
485 microtubule binding
486 embryonic axis specification
487 negative regulation of synapse assembly
488 negative regulation of synapse organization
489 meiotic cytokinesis
490 tissue migration
491 zonula adherens assembly
492 dorsal/ventral pattern formation
493 transcription factor binding
494 R8 cell fate specification
495 regulation of cellular localization
496 blastoderm segmentation
497 mitotic cell cycle phase transition
498 oocyte construction
499 RNA 3'-end processing
500 oocyte development
501 actin filament-based process
502 regulation of mitotic cell cycle phase transition
503 organelle assembly
504 actin cytoskeleton organization
505 sensory organ boundary specification
506 RNA 5'-end processing
507 ncRNA 5'-end processing
508 neuroblast division
509 cytoskeletal protein binding
510 vesicle tethering complex
511 axonal growth cone
512 sensory organ precursor cell fate determination
513 cell fate determination involved in pattern specification
514 organelle fusion
515 negative regulation of cell differentiation
516 regulation of synapse organization
517 bounding membrane of organelle
518 gliogenesis
519 axon midline choice point recognition
520 cell cycle comprising mitosis without cytokinesis
521 photoreceptor cell fate specification
522 fusome
523 single-stranded RNA binding
524 sister chromatid segregation
525 negative regulation of synaptic assembly at neuromuscular junction
526 negative regulation of neuromuscular junction development
527 regulation of neuromuscular junction development
528 cell death
529 negative regulation of canonical Wnt signaling pathway
530 digestive tract development
531 digestive system development
532 response to stress
533 negative regulation of intracellular signal transduction
534 negative regulation of Wnt signaling pathway
535 immune system process
536 epithelial cell migration
537 regulation of reproductive process
538 vesicle fusion
539 regulation of epidermal growth factor receptor signaling pathway
540 regulation of ERBB signaling pathway
541 tubulin binding
542 regulation of insulin receptor signaling pathway
543 follicle cell of egg chamber migration
544 protein kinase A binding
545 intracellular mRNA localization involved in pattern specification process
546 instar larval development
547 neuron recognition
548 mitotic cytokinesis
549 regulation of dendrite development
550 histoblast morphogenesis
551 cell-cell adhesion via plasma-membrane adhesion molecules
552 cellular catabolic process
553 cell adhesion
554 endocytic vesicle
555 intracellular protein-containing complex
556 negative regulation of BMP signaling pathway
557 positive regulation of gene expression
558 inner mitochondrial membrane protein complex
559 anatomical structure homeostasis
560 endoplasmic reticulum
561 nuclear receptor coactivator activity
562 endosomal transport
563 regulation of mRNA stability
564 synapse organization
565 regulation of eye photoreceptor cell development
566 tube morphogenesis
567 epithelium migration
568 oocyte axis specification
569 response to organic substance
570 negative regulation of multicellular organismal process
571 regulation of compound eye photoreceptor cell differentiation
572 exit from mitosis
573 regulation of translation
574 positive regulation of neuron differentiation
575 spindle microtubule
576 asymmetric neuroblast division
577 taxis
578 ribosomal small subunit biogenesis
579 protein domain specific binding
580 cell recognition
581 small-subunit processome
582 regulation of RNA stability
583 exocytic process
584 regulation of cell cycle phase transition
585 positive regulation of cellular catabolic process
586 post-transcriptional gene silencing
587 cell fate commitment involved in pattern specification
588 membrane fusion
589 eye-antennal disc development
590 Golgi apparatus
591 vitellogenesis
592 regulation of locomotion
593 imaginal disc growth
594 preribosome, small subunit precursor
595 establishment of protein localization
596 cell adhesion mediator activity
597 muscle tendon junction
598 biological_process
599 regulation of meiotic cell cycle
600 regulatory ncRNA-mediated gene silencing
601 cell cycle phase transition
602 oocyte anterior/posterior axis specification
603 regulation of mRNA catabolic process
604 regulatory ncRNA-mediated post-transcriptional gene silencing
605 regulation of vesicle-mediated transport
606 egg chorion assembly
607 negative regulation of protein metabolic process
608 chitin-based larval cuticle pattern formation
609 cell division site
610 muscle cell differentiation
611 cortical cytoskeleton organization
612 chromosome
613 microtubule
614 cortical actin cytoskeleton organization
615 site of polarized growth
616 regulation of apoptotic process
617 tRNA 5'-end processing
618 immune system development
619 hematopoietic or lymphoid organ development
620 lymph gland development
621 positive regulation of canonical Wnt signaling pathway
622 oocyte microtubule cytoskeleton organization
623 identical protein binding
624 regulation of imaginal disc growth
625 wing disc dorsal/ventral pattern formation
626 tRNA 5'-leader removal
627 maintenance of protein location
628 response to peptide hormone
629 response to peptide
630 stem cell proliferation
631 vesicle docking
632 organelle membrane fusion
633 intracellular mRNA localization
634 chemotaxis
635 R7 cell fate commitment
636 response to insulin
637 respiratory system development
638 focal adhesion
639 intracellular mRNA localization involved in anterior/posterior axis specification
640 transferase complex
641 RNA localization
642 negative regulation of JNK cascade
643 regulation of R7 cell differentiation
644 open tracheal system development
645 positive regulation of reproductive process
646 ribosome assembly
647 kinesin complex
648 axo-dendritic transport
649 dorsal appendage formation
650 apical cortex
651 regulation of compound eye photoreceptor development
652 male meiosis cytokinesis
653 peroxiredoxin activity
654 regulation of anatomical structure size
655 regulation of protein modification process
656 negative regulation of translation
657 cell-cell junction assembly
658 DNA-binding transcription factor binding
659 establishment or maintenance of polarity of follicular epithelium
660 male meiotic nuclear division
661 regulation of autophagy
662 chaeta development
663 phosphotransferase activity, alcohol group as acceptor
664 meiotic spindle assembly
665 cytokinetic process
666 cytoskeleton
667 photoreceptor cell axon guidance
668 myosin binding
669 receptor signaling pathway via STAT
670 cell growth
671 hippo signaling
672 neuronal stem cell population maintenance
673 microtubule cytoskeleton organization involved in mitosis
674 reactive oxygen species metabolic process
675 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway
676 salivary gland development
677 exocrine system development
678 positive regulation of growth
679 female germ cell nucleus
680 macromolecule catabolic process
681 chromosome organization
682 positive regulation of developmental growth
683 Golgi vesicle transport
684 cytoplasm organization
ontology FDR
1 CC 1.055045e-49
2 CC 6.331594e-44
3 CC 2.322409e-40
4 CC 2.322409e-40
5 CC 4.050205e-38
6 BP 7.299353e-37
7 CC 7.419541e-34
8 BP 6.961970e-32
9 BP 6.961970e-32
10 BP 2.438066e-31
11 BP 2.438066e-31
12 BP 1.504304e-30
13 BP 1.932400e-30
14 BP 9.857892e-30
15 BP 5.216979e-29
16 BP 1.420078e-28
17 BP 8.940959e-28
18 BP 1.569990e-26
19 BP 1.932818e-25
20 BP 2.455538e-25
21 BP 4.354436e-25
22 BP 5.500026e-24
23 BP 5.598704e-24
24 BP 6.413424e-24
25 BP 2.565273e-23
26 BP 1.800342e-22
27 BP 1.533069e-21
28 BP 1.574774e-21
29 BP 1.574774e-21
30 BP 1.977839e-21
31 BP 4.297145e-21
32 BP 6.093662e-21
33 BP 3.686114e-20
34 BP 4.026685e-20
35 BP 4.191066e-20
36 BP 4.963056e-20
37 CC 4.963056e-20
38 BP 7.244934e-20
39 BP 1.412208e-19
40 BP 1.751723e-19
41 BP 2.841272e-19
42 BP 1.087392e-18
43 BP 1.543178e-18
44 BP 1.575194e-18
45 BP 3.876820e-18
46 BP 4.317854e-18
47 BP 4.643199e-18
48 CC 5.044780e-18
49 BP 5.381867e-18
50 BP 5.381867e-18
51 BP 8.355129e-18
52 BP 1.127352e-17
53 BP 1.247693e-17
54 BP 1.948810e-17
55 BP 1.948810e-17
56 BP 3.355559e-17
57 BP 6.095938e-17
58 BP 6.095938e-17
59 BP 6.430242e-17
60 BP 7.309989e-17
61 BP 8.117777e-17
62 MF 1.208572e-16
63 BP 1.232266e-16
64 BP 1.854125e-16
65 BP 2.162581e-16
66 BP 2.175242e-16
67 BP 3.246216e-16
68 BP 7.733560e-16
69 BP 7.733560e-16
70 BP 7.733560e-16
71 BP 8.226014e-16
72 MF 1.506059e-15
73 MF 2.595505e-15
74 BP 2.882547e-15
75 BP 2.924871e-15
76 BP 8.692042e-15
77 MF 3.448645e-14
78 BP 4.557678e-14
79 BP 5.655866e-14
80 BP 5.655866e-14
81 BP 5.655866e-14
82 BP 2.105368e-13
83 BP 2.524323e-13
84 BP 2.990276e-13
85 BP 3.374473e-13
86 BP 6.910340e-13
87 BP 8.367649e-13
88 BP 2.039898e-12
89 BP 3.324594e-12
90 BP 7.036140e-12
91 BP 9.182829e-12
92 MF 1.155450e-11
93 BP 1.194631e-11
94 BP 1.194631e-11
95 BP 1.361540e-11
96 BP 1.431305e-11
97 BP 1.513303e-11
98 BP 1.719940e-11
99 BP 2.825678e-11
100 BP 2.890812e-11
101 BP 3.393681e-11
102 BP 5.751887e-11
103 CC 6.205920e-11
104 BP 7.037765e-11
105 BP 7.037765e-11
106 BP 9.068792e-11
107 BP 1.168088e-10
108 MF 1.234294e-10
109 BP 1.665803e-10
110 BP 1.888572e-10
111 BP 1.888572e-10
112 BP 3.298072e-10
113 MF 3.421647e-10
114 BP 3.709322e-10
115 BP 3.964743e-10
116 MF 4.127956e-10
117 BP 4.373777e-10
118 BP 5.853473e-10
119 BP 7.546408e-10
120 BP 7.755711e-10
121 BP 9.429721e-10
122 MF 1.524209e-09
123 BP 1.615740e-09
124 MF 2.119249e-09
125 BP 2.479163e-09
126 BP 2.488254e-09
127 BP 2.552210e-09
128 BP 2.566226e-09
129 BP 3.310346e-09
130 MF 3.386087e-09
131 BP 3.400131e-09
132 BP 3.499822e-09
133 BP 3.580598e-09
134 MF 3.661096e-09
135 BP 3.690682e-09
136 BP 3.951477e-09
137 MF 4.000228e-09
138 BP 4.060391e-09
139 BP 4.060391e-09
140 BP 4.401162e-09
141 BP 4.696694e-09
142 BP 5.380780e-09
143 BP 5.581917e-09
144 BP 5.792642e-09
145 CC 6.737015e-09
146 BP 6.836576e-09
147 BP 8.136216e-09
148 BP 8.409443e-09
149 BP 1.170037e-08
150 BP 1.361962e-08
151 BP 1.548318e-08
152 CC 1.628739e-08
153 MF 1.748334e-08
154 MF 2.101486e-08
155 BP 2.252117e-08
156 BP 3.060478e-08
157 BP 3.084266e-08
158 BP 3.892225e-08
159 BP 3.927869e-08
160 BP 3.977055e-08
161 BP 4.327108e-08
162 MF 6.323790e-08
163 CC 6.406980e-08
164 BP 6.466385e-08
165 BP 6.916550e-08
166 CC 7.186804e-08
167 CC 7.186804e-08
168 BP 7.199868e-08
169 CC 7.663794e-08
170 BP 7.663794e-08
171 BP 7.788548e-08
172 BP 8.405934e-08
173 BP 8.886714e-08
174 BP 9.446322e-08
175 BP 1.060734e-07
176 BP 1.311830e-07
177 BP 1.332516e-07
178 BP 1.404101e-07
179 BP 1.901917e-07
180 BP 2.211769e-07
181 BP 2.312547e-07
182 CC 2.383289e-07
183 CC 2.383289e-07
184 BP 2.415599e-07
185 BP 2.435715e-07
186 CC 2.544100e-07
187 BP 4.113986e-07
188 BP 4.113986e-07
189 BP 4.168404e-07
190 BP 4.299854e-07
191 BP 5.562103e-07
192 BP 6.619005e-07
193 BP 7.241027e-07
194 BP 7.302645e-07
195 MF 7.529317e-07
196 BP 9.123387e-07
197 BP 9.397799e-07
198 BP 1.059473e-06
199 BP 1.092996e-06
200 BP 1.092996e-06
201 BP 1.563424e-06
202 BP 1.741336e-06
203 MF 1.741336e-06
204 BP 1.814749e-06
205 MF 1.907000e-06
206 BP 1.907000e-06
207 CC 2.040453e-06
208 BP 2.360285e-06
209 BP 2.569695e-06
210 BP 2.768006e-06
211 BP 2.924494e-06
212 BP 3.453203e-06
213 BP 3.581018e-06
214 BP 3.581227e-06
215 BP 3.909976e-06
216 BP 4.074308e-06
217 BP 4.583921e-06
218 CC 4.764107e-06
219 CC 5.299963e-06
220 BP 6.019242e-06
221 BP 6.060222e-06
222 BP 6.060222e-06
223 BP 6.227698e-06
224 BP 6.354576e-06
225 BP 6.473451e-06
226 CC 6.549795e-06
227 BP 6.788020e-06
228 BP 6.788020e-06
229 BP 6.814771e-06
230 BP 6.814771e-06
231 BP 7.085766e-06
232 CC 7.193688e-06
233 BP 7.193688e-06
234 CC 7.359749e-06
235 BP 7.786995e-06
236 BP 8.244685e-06
237 BP 1.017176e-05
238 BP 1.017176e-05
239 BP 1.100480e-05
240 BP 1.221972e-05
241 BP 1.233699e-05
242 BP 1.244223e-05
243 BP 1.288490e-05
244 BP 1.337903e-05
245 BP 1.376340e-05
246 BP 1.531834e-05
247 BP 1.536271e-05
248 BP 1.551834e-05
249 BP 1.653152e-05
250 BP 1.740141e-05
251 BP 2.131041e-05
252 CC 2.340715e-05
253 BP 2.634843e-05
254 BP 2.646143e-05
255 BP 2.799169e-05
256 BP 2.963152e-05
257 BP 2.964626e-05
258 BP 3.100914e-05
259 CC 3.298992e-05
260 BP 3.641650e-05
261 BP 3.920114e-05
262 BP 4.256497e-05
263 BP 4.285284e-05
264 BP 4.427942e-05
265 CC 4.539110e-05
266 BP 4.556482e-05
267 BP 4.734448e-05
268 BP 4.920352e-05
269 BP 4.961847e-05
270 BP 5.166541e-05
271 MF 5.340853e-05
272 BP 5.406198e-05
273 BP 5.624636e-05
274 CC 5.926125e-05
275 BP 5.965476e-05
276 BP 5.991529e-05
277 BP 6.604472e-05
278 BP 8.383044e-05
279 BP 8.613148e-05
280 BP 1.246288e-04
281 BP 1.250397e-04
282 BP 1.346672e-04
283 BP 1.379020e-04
284 BP 1.496354e-04
285 BP 1.531442e-04
286 CC 1.555994e-04
287 CC 1.710064e-04
288 BP 1.716817e-04
289 BP 1.935863e-04
290 BP 1.952478e-04
291 BP 2.146283e-04
292 BP 2.317627e-04
293 BP 2.386001e-04
294 BP 2.557990e-04
295 BP 2.731291e-04
296 BP 2.731291e-04
297 BP 2.731291e-04
298 BP 2.836414e-04
299 BP 2.869392e-04
300 BP 2.869392e-04
301 BP 2.879400e-04
302 BP 2.965082e-04
303 BP 3.311390e-04
304 BP 3.855143e-04
305 CC 4.051471e-04
306 BP 4.123673e-04
307 BP 4.647430e-04
308 BP 4.793930e-04
309 BP 5.067878e-04
310 BP 5.080668e-04
311 MF 5.600495e-04
312 BP 5.702769e-04
313 BP 5.772837e-04
314 BP 6.301675e-04
315 BP 6.301675e-04
316 BP 6.462287e-04
317 BP 6.680596e-04
318 BP 6.680596e-04
319 BP 6.733567e-04
320 BP 6.807757e-04
321 MF 7.376170e-04
322 BP 7.439296e-04
323 BP 7.497953e-04
324 BP 7.645297e-04
325 BP 7.806882e-04
326 BP 8.092228e-04
327 BP 8.359238e-04
328 BP 8.549966e-04
329 BP 8.640456e-04
330 BP 9.177403e-04
331 BP 9.303544e-04
332 BP 9.541179e-04
333 BP 9.541179e-04
334 BP 9.642140e-04
335 BP 9.642140e-04
336 BP 9.642140e-04
337 BP 9.642140e-04
338 MF 1.007912e-03
339 BP 1.008660e-03
340 BP 1.096953e-03
341 BP 1.106369e-03
342 CC 1.106691e-03
343 BP 1.111151e-03
344 BP 1.122737e-03
345 BP 1.140882e-03
346 BP 1.140882e-03
347 BP 1.190823e-03
348 BP 1.257923e-03
349 BP 1.257923e-03
350 BP 1.257923e-03
351 BP 1.275332e-03
352 BP 1.303891e-03
353 BP 1.328126e-03
354 BP 1.333360e-03
355 BP 1.404326e-03
356 BP 1.463950e-03
357 BP 1.469755e-03
358 BP 1.483336e-03
359 BP 1.533648e-03
360 BP 1.595445e-03
361 BP 1.595445e-03
362 BP 1.600716e-03
363 BP 1.626152e-03
364 BP 1.646723e-03
365 BP 1.646761e-03
366 BP 1.671673e-03
367 BP 1.680305e-03
368 CC 1.807497e-03
369 BP 1.807497e-03
370 BP 1.807497e-03
371 BP 1.872270e-03
372 BP 1.907100e-03
373 BP 2.000570e-03
374 CC 2.027625e-03
375 BP 2.140994e-03
376 BP 2.183749e-03
377 BP 2.204238e-03
378 BP 2.229339e-03
379 MF 2.259172e-03
380 BP 2.476326e-03
381 BP 2.517166e-03
382 BP 2.541106e-03
383 CC 2.546029e-03
384 MF 2.602712e-03
385 BP 2.707192e-03
386 CC 2.707192e-03
387 BP 2.711459e-03
388 CC 3.055967e-03
389 BP 3.090314e-03
390 BP 3.198558e-03
391 BP 3.261914e-03
392 BP 3.279327e-03
393 BP 3.344793e-03
394 BP 3.375111e-03
395 BP 3.390643e-03
396 BP 3.392939e-03
397 BP 3.403082e-03
398 BP 3.403082e-03
399 BP 3.485017e-03
400 BP 3.665382e-03
401 MF 3.673867e-03
402 BP 3.820049e-03
403 BP 3.863753e-03
404 CC 3.944371e-03
405 CC 3.944371e-03
406 BP 3.981300e-03
407 BP 4.186127e-03
408 BP 4.293069e-03
409 BP 4.457352e-03
410 BP 4.494125e-03
411 BP 4.598265e-03
412 BP 4.619347e-03
413 BP 4.641353e-03
414 CC 4.714406e-03
415 BP 4.776440e-03
416 BP 4.814797e-03
417 BP 4.903753e-03
418 CC 4.968761e-03
419 MF 5.029838e-03
420 BP 5.244906e-03
421 BP 5.272763e-03
422 BP 5.428230e-03
423 CC 5.435006e-03
424 CC 5.637375e-03
425 BP 5.867634e-03
426 CC 5.867634e-03
427 BP 6.033307e-03
428 BP 6.281681e-03
429 BP 6.281681e-03
430 BP 6.512258e-03
431 BP 6.524731e-03
432 BP 6.674062e-03
433 BP 6.706548e-03
434 BP 6.746929e-03
435 BP 6.986009e-03
436 BP 7.117678e-03
437 CC 7.203077e-03
438 BP 7.252390e-03
439 BP 7.272886e-03
440 BP 7.310515e-03
441 BP 7.310515e-03
442 BP 7.310515e-03
443 BP 7.310515e-03
444 BP 7.310515e-03
445 BP 7.310515e-03
446 BP 7.310515e-03
447 BP 7.354935e-03
448 BP 7.416309e-03
449 BP 7.760759e-03
450 BP 7.798300e-03
451 BP 7.878171e-03
452 BP 8.275598e-03
453 MF 8.589095e-03
454 BP 8.599065e-03
455 BP 8.675221e-03
456 BP 8.705226e-03
457 BP 8.790335e-03
458 BP 9.141434e-03
459 BP 9.187379e-03
460 BP 9.226748e-03
461 BP 9.226748e-03
462 BP 9.226748e-03
463 BP 9.226748e-03
464 BP 9.391428e-03
465 BP 9.391428e-03
466 BP 9.440262e-03
467 BP 9.474365e-03
468 CC 9.520268e-03
469 BP 9.686386e-03
470 BP 1.030149e-02
471 MF 1.044816e-02
472 BP 1.051814e-02
473 BP 1.051814e-02
474 CC 1.063411e-02
475 BP 1.063411e-02
476 BP 1.103522e-02
477 BP 1.103522e-02
478 BP 1.133366e-02
479 BP 1.179461e-02
480 BP 1.179461e-02
481 BP 1.179461e-02
482 MF 1.201377e-02
483 BP 1.218377e-02
484 BP 1.218377e-02
485 MF 1.219987e-02
486 BP 1.228835e-02
487 BP 1.228835e-02
488 BP 1.228835e-02
489 BP 1.234839e-02
490 BP 1.237880e-02
491 BP 1.237880e-02
492 BP 1.237880e-02
493 MF 1.265843e-02
494 BP 1.276930e-02
495 BP 1.283096e-02
496 BP 1.292732e-02
497 BP 1.313045e-02
498 BP 1.321201e-02
499 BP 1.333258e-02
500 BP 1.371945e-02
501 BP 1.387955e-02
502 BP 1.411126e-02
503 BP 1.479712e-02
504 BP 1.506023e-02
505 BP 1.527240e-02
506 BP 1.527240e-02
507 BP 1.527240e-02
508 BP 1.527240e-02
509 MF 1.565026e-02
510 CC 1.571505e-02
511 CC 1.571505e-02
512 BP 1.571505e-02
513 BP 1.571505e-02
514 BP 1.614279e-02
515 BP 1.620932e-02
516 BP 1.620932e-02
517 CC 1.630663e-02
518 BP 1.653053e-02
519 BP 1.697826e-02
520 BP 1.720946e-02
521 BP 1.724343e-02
522 CC 1.724343e-02
523 MF 1.735260e-02
524 BP 1.742794e-02
525 BP 1.742794e-02
526 BP 1.742794e-02
527 BP 1.742794e-02
528 BP 1.804810e-02
529 BP 1.824520e-02
530 BP 1.850315e-02
531 BP 1.850315e-02
532 BP 1.859597e-02
533 BP 1.900892e-02
534 BP 1.967193e-02
535 BP 2.003276e-02
536 BP 2.017327e-02
537 BP 2.030886e-02
538 BP 2.044750e-02
539 BP 2.044750e-02
540 BP 2.044750e-02
541 MF 2.046008e-02
542 BP 2.064139e-02
543 BP 2.109617e-02
544 MF 2.152363e-02
545 BP 2.164665e-02
546 BP 2.168103e-02
547 BP 2.168103e-02
548 BP 2.169249e-02
549 BP 2.169249e-02
550 BP 2.169249e-02
551 BP 2.180880e-02
552 BP 2.209890e-02
553 BP 2.227862e-02
554 CC 2.227862e-02
555 CC 2.227862e-02
556 BP 2.229524e-02
557 BP 2.241059e-02
558 CC 2.246674e-02
559 BP 2.254257e-02
560 CC 2.280036e-02
561 MF 2.280036e-02
562 BP 2.282808e-02
563 BP 2.282808e-02
564 BP 2.283913e-02
565 BP 2.294638e-02
566 BP 2.340924e-02
567 BP 2.381733e-02
568 BP 2.381733e-02
569 BP 2.435629e-02
570 BP 2.452541e-02
571 BP 2.475523e-02
572 BP 2.487236e-02
573 BP 2.531847e-02
574 BP 2.571770e-02
575 CC 2.575210e-02
576 BP 2.579664e-02
577 BP 2.582495e-02
578 BP 2.584860e-02
579 MF 2.591267e-02
580 BP 2.591267e-02
581 CC 2.593250e-02
582 BP 2.715350e-02
583 BP 2.733714e-02
584 BP 2.748323e-02
585 BP 2.760463e-02
586 BP 2.767569e-02
587 BP 2.779085e-02
588 BP 2.783051e-02
589 BP 2.807226e-02
590 CC 2.812163e-02
591 BP 2.814488e-02
592 BP 2.835966e-02
593 BP 2.840091e-02
594 CC 2.854787e-02
595 BP 2.854787e-02
596 MF 2.854787e-02
597 CC 2.889990e-02
598 BP 2.898745e-02
599 BP 2.898745e-02
600 BP 2.984710e-02
601 BP 2.984710e-02
602 BP 2.984710e-02
603 BP 3.040129e-02
604 BP 3.048772e-02
605 BP 3.058862e-02
606 BP 3.160894e-02
607 BP 3.180949e-02
608 BP 3.208132e-02
609 CC 3.216790e-02
610 BP 3.223111e-02
611 BP 3.231153e-02
612 CC 3.231153e-02
613 CC 3.231153e-02
614 BP 3.238569e-02
615 CC 3.246090e-02
616 BP 3.263894e-02
617 BP 3.268017e-02
618 BP 3.268017e-02
619 BP 3.268017e-02
620 BP 3.268017e-02
621 BP 3.268017e-02
622 BP 3.295755e-02
623 MF 3.337634e-02
624 BP 3.337634e-02
625 BP 3.337634e-02
626 BP 3.346801e-02
627 BP 3.367531e-02
628 BP 3.372725e-02
629 BP 3.372725e-02
630 BP 3.378790e-02
631 BP 3.414403e-02
632 BP 3.414403e-02
633 BP 3.415237e-02
634 BP 3.438945e-02
635 BP 3.460978e-02
636 BP 3.478630e-02
637 BP 3.506009e-02
638 CC 3.506880e-02
639 BP 3.509723e-02
640 CC 3.552165e-02
641 BP 3.628088e-02
642 BP 3.659953e-02
643 BP 3.682301e-02
644 BP 3.741485e-02
645 BP 3.743828e-02
646 BP 3.743828e-02
647 CC 3.767953e-02
648 BP 3.856732e-02
649 BP 3.856732e-02
650 CC 3.878825e-02
651 BP 3.916442e-02
652 BP 3.992842e-02
653 MF 4.006367e-02
654 BP 4.031708e-02
655 BP 4.037702e-02
656 BP 4.041079e-02
657 BP 4.047087e-02
658 MF 4.088444e-02
659 BP 4.088444e-02
660 BP 4.150039e-02
661 BP 4.166739e-02
662 BP 4.181614e-02
663 MF 4.203878e-02
664 BP 4.328559e-02
665 BP 4.372488e-02
666 CC 4.372488e-02
667 BP 4.377768e-02
668 MF 4.387947e-02
669 BP 4.437554e-02
670 BP 4.451752e-02
671 BP 4.479421e-02
672 BP 4.487336e-02
673 BP 4.487336e-02
674 BP 4.487336e-02
675 BP 4.541259e-02
676 BP 4.588325e-02
677 BP 4.588325e-02
678 BP 4.595271e-02
679 CC 4.693631e-02
680 BP 4.695484e-02
681 BP 4.728973e-02
682 BP 4.843832e-02
683 BP 4.856010e-02
684 BP 4.898074e-02
sessionInfo()R Under development (unstable) (2024-01-17 r85813)
Platform: x86_64-apple-darwin20
Running under: macOS Sonoma 14.1.1
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Australia/Melbourne
tzcode source: internal
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] BSgenome.Dmelanogaster.UCSC.dm6_1.4.1
[2] BSgenome_1.72.0
[3] rtracklayer_1.64.0
[4] BiocIO_1.14.0
[5] Biostrings_2.72.1
[6] XVector_0.44.0
[7] TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0
[8] GenomicFeatures_1.56.0
[9] org.Dm.eg.db_3.19.1
[10] AnnotationDbi_1.66.0
[11] Biobase_2.64.0
[12] ggplot2_3.5.1
[13] dplyr_1.1.4
[14] plyranges_1.24.0
[15] GenomicRanges_1.56.1
[16] GenomeInfoDb_1.40.1
[17] IRanges_2.38.1
[18] S4Vectors_0.42.1
[19] BiocGenerics_0.50.0
[20] Damsel_1.0.0
loaded via a namespace (and not attached):
[1] DBI_1.2.3 bitops_1.0-8
[3] httr2_1.0.2 BiasedUrn_2.0.12
[5] biomaRt_2.60.1 rlang_1.1.3
[7] magrittr_2.0.3.9000 git2r_0.33.0
[9] matrixStats_1.3.0 compiler_4.4.0
[11] RSQLite_2.3.7 mgcv_1.9-1
[13] txdbmaker_1.0.1 png_0.1-8
[15] vctrs_0.6.5 stringr_1.5.1.9000
[17] pkgconfig_2.0.3 crayon_1.5.3
[19] fastmap_1.2.0 dbplyr_2.5.0
[21] labeling_0.4.3 utf8_1.2.4
[23] Rsamtools_2.20.0 promises_1.3.0
[25] rmarkdown_2.27 UCSC.utils_1.0.0
[27] bit_4.0.5 xfun_0.44
[29] zlibbioc_1.50.0 cachem_1.1.0
[31] jsonlite_1.8.8 progress_1.2.3
[33] blob_1.2.4 highr_0.10
[35] later_1.3.2 DelayedArray_0.30.1
[37] BiocParallel_1.38.0 prettyunits_1.2.0
[39] parallel_4.4.0 R6_2.5.1
[41] bslib_0.7.0 stringi_1.8.4
[43] jquerylib_0.1.4 Rcpp_1.0.12
[45] SummarizedExperiment_1.34.0 knitr_1.46
[47] httpuv_1.6.15 Matrix_1.7-0
[49] splines_4.4.0 tidyselect_1.2.1
[51] rstudioapi_0.16.0 abind_1.4-5
[53] yaml_2.3.8 codetools_0.2-20
[55] curl_5.2.1 lattice_0.22-6
[57] tibble_3.2.1 withr_3.0.1
[59] KEGGREST_1.44.1 evaluate_0.23
[61] goseq_1.56.0 BiocFileCache_2.12.0
[63] xml2_1.3.6 filelock_1.0.3
[65] pillar_1.9.0 MatrixGenerics_1.16.0
[67] whisker_0.4.1 generics_0.1.3
[69] rprojroot_2.0.4 RCurl_1.98-1.16
[71] hms_1.1.3 munsell_0.5.1
[73] scales_1.3.0 glue_1.7.0
[75] tools_4.4.0 GenomicAlignments_1.40.0
[77] geneLenDataBase_1.40.1 fs_1.6.4
[79] XML_3.99-0.17 grid_4.4.0
[81] colorspace_2.1-1 nlme_3.1-164
[83] GenomeInfoDbData_1.2.12 restfulr_0.0.15
[85] cli_3.6.2 rappdirs_0.3.3
[87] workflowr_1.7.1 fansi_1.0.6
[89] S4Arrays_1.4.1 gtable_0.3.5
[91] sass_0.4.9 digest_0.6.35
[93] SparseArray_1.4.8 farver_2.1.2
[95] rjson_0.2.21 memoise_2.0.1
[97] htmltools_0.5.8.1 lifecycle_1.0.4
[99] httr_1.4.7 GO.db_3.19.1
[101] bit64_4.0.5